Analysis of interatomic Contacts of Structural Units in PDB entry:
9B4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B4J entry

There are no protein chains in PDB file9B4J There are no helices in PDB entry 9B4J

There are 10 sheets in PDB entry 9B4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	2	6	first strand
Strand 2	U	2	6	anti-parallel
Strand 3	B	2	6	anti-parallel
Strand 4	A	2	6	anti-parallel
Strand 5	f	2	6	anti-parallel
Strand 6	e	2	6	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	2	6	first strand
Strand 2	W	2	6	anti-parallel
Strand 3	D	2	6	anti-parallel
Strand 4	C	2	6	anti-parallel
Strand 5	h	2	6	anti-parallel
Strand 6	g	2	6	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	2	6	first strand
Strand 2	Y	2	6	anti-parallel
Strand 3	F	2	6	anti-parallel
Strand 4	E	2	6	anti-parallel
Strand 5	j	2	6	anti-parallel
Strand 6	i	2	6	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	2	6	first strand
Strand 2	0	2	6	anti-parallel
Strand 3	H	2	6	anti-parallel
Strand 4	G	2	6	anti-parallel
Strand 5	l	2	6	anti-parallel
Strand 6	k	2	6	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	2	6	first strand
Strand 2	2	2	6	anti-parallel
Strand 3	J	2	6	anti-parallel
Strand 4	I	2	6	anti-parallel
Strand 5	n	2	6	anti-parallel
Strand 6	m	2	6	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	2	6	first strand
Strand 2	4	2	6	anti-parallel
Strand 3	L	2	6	anti-parallel
Strand 4	K	2	6	anti-parallel
Strand 5	p	2	6	anti-parallel
Strand 6	o	2	6	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	2	6	first strand
Strand 2	6	2	6	anti-parallel
Strand 3	N	2	6	anti-parallel
Strand 4	M	2	6	anti-parallel
Strand 5	r	2	6	anti-parallel
Strand 6	q	2	6	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	2	6	first strand
Strand 2	8	2	6	anti-parallel
Strand 3	P	2	6	anti-parallel
Strand 4	O	2	6	anti-parallel
Strand 5	t	2	6	anti-parallel
Strand 6	s	2	6	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	2	6	first strand
Strand 2	a	2	6	anti-parallel
Strand 3	R	2	6	anti-parallel
Strand 4	Q	2	6	anti-parallel
Strand 5	v	2	6	anti-parallel
Strand 6	u	2	6	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	2	6	first strand
Strand 2	c	2	6	anti-parallel
Strand 3	T	2	6	anti-parallel
Strand 4	S	2	6	anti-parallel
Strand 5	x	2	6	anti-parallel
Strand 6	w	2	6	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B4J