Analysis of interatomic Contacts of Structural Units in PDB entry:
9B61

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B61 entry

There are 8 chains in PDB entry 9B61 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ASP 5	ALA 214
F	ASP 5	ALA 214
C	LYS 393	MET 825
B	LYS 393	MET 825
A	LYS 393	MET 825
D	LYS 393	MET 825
E	LEU 3	ALA 214
G	LEU 3	ALA 214

There are 90 helices in PDB entry 9B61. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	5	30	Right-handed alpha
Helix 2	AA2	H	92	105	Right-handed alpha
Helix 3	AA3	H	105	128	Right-handed alpha
Helix 4	AA4	H	132	162	Right-handed alpha
Helix 5	AA5	H	177	214	Right-handed alpha
Helix 6	AA6	F	6	30	Right-handed alpha
Helix 7	AA7	F	92	105	Right-handed alpha
Helix 8	AA8	F	105	125	Right-handed alpha
Helix 9	AA9	F	132	162	Right-handed alpha
Helix 10	AB1	F	177	214	Right-handed alpha
Helix 11	AB2	C	416	419	Right-handed 310
Helix 12	AB3	C	423	437	Right-handed alpha
Helix 13	AB4	C	461	469	Right-handed alpha
Helix 14	AB5	C	482	487	Right-handed alpha
Helix 15	AB6	C	515	519	Right-handed 310
Helix 16	AB7	C	522	546	Right-handed alpha
Helix 17	AB8	C	547	551	Right-handed 310
Helix 18	AB9	C	572	585	Right-handed alpha
Helix 19	AC1	C	595	630	Right-handed alpha
Helix 20	AC2	C	635	642	Right-handed alpha
Helix 21	AC3	C	653	662	Right-handed alpha
Helix 22	AC4	C	664	676	Right-handed alpha
Helix 23	AC5	C	685	696	Right-handed alpha
Helix 24	AC6	C	705	715	Right-handed alpha
Helix 25	AC7	C	742	757	Right-handed alpha
Helix 26	AC8	C	757	769	Right-handed alpha
Helix 27	AC9	C	788	791	Right-handed 310
Helix 28	AD1	C	792	825	Right-handed alpha
Helix 29	AD2	B	423	437	Right-handed alpha
Helix 30	AD3	B	461	469	Right-handed alpha
Helix 31	AD4	B	482	489	Right-handed alpha
Helix 32	AD5	B	515	519	Right-handed 310
Helix 33	AD6	B	522	546	Right-handed alpha
Helix 34	AD7	B	547	551	Right-handed 310
Helix 35	AD8	B	572	585	Right-handed alpha
Helix 36	AD9	B	595	626	Right-handed alpha
Helix 37	AE1	B	635	642	Right-handed alpha
Helix 38	AE2	B	653	660	Right-handed alpha
Helix 39	AE3	B	664	670	Right-handed alpha
Helix 40	AE4	B	672	677	Right-handed alpha
Helix 41	AE5	B	685	695	Right-handed alpha
Helix 42	AE6	B	706	715	Right-handed alpha
Helix 43	AE7	B	742	756	Right-handed alpha
Helix 44	AE8	B	757	768	Right-handed alpha
Helix 45	AE9	B	788	791	Right-handed 310
Helix 46	AF1	B	792	825	Right-handed alpha
Helix 47	AF2	A	416	419	Right-handed 310
Helix 48	AF3	A	423	437	Right-handed alpha
Helix 49	AF4	A	461	469	Right-handed alpha
Helix 50	AF5	A	482	488	Right-handed alpha
Helix 51	AF6	A	515	519	Right-handed 310
Helix 52	AF7	A	522	546	Right-handed alpha
Helix 53	AF8	A	572	585	Right-handed alpha
Helix 54	AF9	A	595	630	Right-handed alpha
Helix 55	AG1	A	635	642	Right-handed alpha
Helix 56	AG2	A	653	661	Right-handed alpha
Helix 57	AG3	A	664	675	Right-handed alpha
Helix 58	AG4	A	685	696	Right-handed alpha
Helix 59	AG5	A	706	714	Right-handed alpha
Helix 60	AG6	A	742	757	Right-handed alpha
Helix 61	AG7	A	757	769	Right-handed alpha
Helix 62	AG8	A	788	791	Right-handed 310
Helix 63	AG9	A	792	825	Right-handed alpha
Helix 64	AH1	D	416	419	Right-handed 310
Helix 65	AH2	D	423	437	Right-handed alpha
Helix 66	AH3	D	461	469	Right-handed alpha
Helix 67	AH4	D	482	489	Right-handed alpha
Helix 68	AH5	D	515	519	Right-handed 310
Helix 69	AH6	D	522	546	Right-handed alpha
Helix 70	AH7	D	547	551	Right-handed 310
Helix 71	AH8	D	572	585	Right-handed alpha
Helix 72	AH9	D	595	626	Right-handed alpha
Helix 73	AI1	D	635	642	Right-handed alpha
Helix 74	AI2	D	653	662	Right-handed alpha
Helix 75	AI3	D	664	675	Right-handed alpha
Helix 76	AI4	D	685	697	Right-handed alpha
Helix 77	AI5	D	706	714	Right-handed alpha
Helix 78	AI6	D	742	753	Right-handed alpha
Helix 79	AI7	D	757	769	Right-handed alpha
Helix 80	AI8	D	788	825	Right-handed alpha
Helix 81	AI9	E	6	30	Right-handed alpha
Helix 82	AJ1	E	92	105	Right-handed alpha
Helix 83	AJ2	E	105	125	Right-handed alpha
Helix 84	AJ3	E	133	161	Right-handed alpha
Helix 85	AJ4	E	177	214	Right-handed alpha
Helix 86	AJ5	G	5	30	Right-handed alpha
Helix 87	AJ6	G	92	105	Right-handed alpha
Helix 88	AJ7	G	105	125	Right-handed alpha
Helix 89	AJ8	G	132	161	Right-handed alpha
Helix 90	AJ9	G	177	214	Right-handed alpha

There are 22 sheets in PDB entry 9B61. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	68	first strand
Strand 2	H	57	61	anti-parallel
Strand 3	H	34	38	anti-parallel
Strand 4	H	175	176	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	79	first strand
Strand 2	F	65	68	anti-parallel
Strand 3	F	56	61	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	175	176	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	395	399	parallel
Strand 3	C	474	475	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	491	first strand
Strand 2	C	735	737	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	730	732	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	502	505	first strand
Strand 2	C	720	723	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	702	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	395	399	parallel
Strand 3	B	474	480	parallel
Strand 4	B	730	736	anti-parallel
Strand 5	B	490	491	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	395	399	parallel
Strand 3	B	474	480	parallel
Strand 4	B	730	736	anti-parallel
Strand 5	B	496	498	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	395	399	parallel
Strand 3	A	474	475	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	498	first strand
Strand 2	A	730	737	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	505	anti-parallel
Strand 4	A	720	722	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	395	399	parallel
Strand 3	D	474	480	parallel
Strand 4	D	730	736	anti-parallel
Strand 5	D	490	491	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	395	399	parallel
Strand 3	D	474	480	parallel
Strand 4	D	730	736	anti-parallel
Strand 5	D	497	498	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	723	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	79	first strand
Strand 2	E	65	68	anti-parallel
Strand 3	E	57	61	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	175	176	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	79	first strand
Strand 2	G	65	68	anti-parallel
Strand 3	G	57	61	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	174	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B61

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B61