Analysis of interatomic Contacts of Structural Units in PDB entry:
9B62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B62 entry

There are 7 chains in PDB entry 9B62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	ARG 1052
B	PRO 7	MET 179
C	SER 2	PRO 157
D	GLU 20	GLY 97
E	ALA 2507	GLN 3048
F	GLN 8	GLU 212
G	ALA 2	VAL 587

There are112 helices in PDB entry 9B62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	15	Right-handed alpha
Helix 2	AA2	A	16	18	Right-handed 310
Helix 3	AA3	A	24	37	Right-handed alpha
Helix 4	AA4	A	40	55	Right-handed alpha
Helix 5	AA5	A	58	61	Right-handed 310
Helix 6	AA6	A	62	70	Right-handed alpha
Helix 7	AA7	A	72	91	Right-handed alpha
Helix 8	AA8	A	92	94	Right-handed 310
Helix 9	AA9	A	95	115	Right-handed alpha
Helix 10	AB1	A	116	123	Right-handed alpha
Helix 11	AB2	A	125	146	Right-handed alpha
Helix 12	AB3	A	148	157	Right-handed alpha
Helix 13	AB4	A	160	180	Right-handed alpha
Helix 14	AB5	A	187	201	Right-handed alpha
Helix 15	AB6	A	206	216	Right-handed alpha
Helix 16	AB7	A	218	233	Right-handed alpha
Helix 17	AB8	A	238	243	Right-handed alpha
Helix 18	AB9	A	245	254	Right-handed alpha
Helix 19	AC1	A	257	259	Right-handed 310
Helix 20	AC2	A	260	273	Right-handed alpha
Helix 21	AC3	A	280	295	Right-handed alpha
Helix 22	AC4	A	303	310	Right-handed alpha
Helix 23	AC5	A	312	340	Right-handed alpha
Helix 24	AC6	A	343	358	Right-handed alpha
Helix 25	AC7	A	362	384	Right-handed alpha
Helix 26	AC8	A	403	423	Right-handed alpha
Helix 27	AC9	A	448	468	Right-handed alpha
Helix 28	AD1	A	468	485	Right-handed alpha
Helix 29	AD2	A	490	504	Right-handed alpha
Helix 30	AD3	A	509	531	Right-handed alpha
Helix 31	AD4	A	533	550	Right-handed alpha
Helix 32	AD5	A	551	558	Right-handed alpha
Helix 33	AD6	A	558	573	Right-handed alpha
Helix 34	AD7	A	579	595	Right-handed alpha
Helix 35	AD8	A	596	601	Right-handed alpha
Helix 36	AD9	A	609	617	Right-handed alpha
Helix 37	AE1	A	626	642	Right-handed alpha
Helix 38	AE2	A	646	658	Right-handed alpha
Helix 39	AE3	A	658	675	Right-handed alpha
Helix 40	AE4	A	676	680	Right-handed 310
Helix 41	AE5	A	681	703	Right-handed alpha
Helix 42	AE6	A	706	736	Right-handed alpha
Helix 43	AE7	A	737	741	Right-handed 310
Helix 44	AE8	A	742	765	Right-handed alpha
Helix 45	AE9	A	768	776	Right-handed alpha
Helix 46	AF1	A	776	784	Right-handed alpha
Helix 47	AF2	A	784	791	Right-handed alpha
Helix 48	AF3	A	792	796	Right-handed 310
Helix 49	AF4	A	797	812	Right-handed alpha
Helix 50	AF5	A	813	816	Right-handed 310
Helix 51	AF6	A	818	835	Right-handed alpha
Helix 52	AF7	A	841	859	Right-handed alpha
Helix 53	AF8	A	860	865	Right-handed 310
Helix 54	AF9	A	867	882	Right-handed alpha
Helix 55	AG1	A	886	907	Right-handed alpha
Helix 56	AG2	A	907	931	Right-handed alpha
Helix 57	AG3	A	932	937	Right-handed 310
Helix 58	AG4	A	938	955	Right-handed alpha
Helix 59	AG5	A	969	986	Right-handed alpha
Helix 60	AG6	A	990	1004	Right-handed alpha
Helix 61	AG7	A	1007	1022	Right-handed alpha
Helix 62	AG8	A	1034	1052	Right-handed alpha
Helix 63	AG9	B	22	33	Right-handed alpha
Helix 64	AH1	B	75	80	Right-handed 310
Helix 65	AH2	B	94	100	Right-handed alpha
Helix 66	AH3	B	100	110	Right-handed alpha
Helix 67	AH4	B	132	136	Right-handed 310
Helix 68	AH5	B	138	143	Right-handed alpha
Helix 69	AH6	B	158	170	Right-handed alpha
Helix 70	AH7	C	3	19	Right-handed alpha
Helix 71	AH8	C	108	121	Right-handed alpha
Helix 72	AH9	C	130	140	Right-handed alpha
Helix 73	AI1	C	140	155	Right-handed alpha
Helix 74	AI2	D	44	55	Right-handed alpha
Helix 75	AI3	D	76	81	Right-handed alpha
Helix 76	AI4	E	2641	2652	Right-handed alpha
Helix 77	AI5	E	2656	2663	Right-handed 310
Helix 78	AI6	E	2676	2685	Right-handed alpha
Helix 79	AI7	E	2849	2857	Right-handed alpha
Helix 80	AI8	E	3026	3048	Right-handed alpha
Helix 81	AI9	F	22	32	Right-handed alpha
Helix 82	AJ1	F	73	75	Right-handed 310
Helix 83	AJ2	F	76	81	Right-handed alpha
Helix 84	AJ3	F	94	99	Right-handed alpha
Helix 85	AJ4	F	100	112	Right-handed alpha
Helix 86	AJ5	F	137	142	Right-handed alpha
Helix 87	AJ6	F	158	170	Right-handed alpha
Helix 88	AJ7	F	190	205	Right-handed alpha
Helix 89	AJ8	G	3	15	Right-handed alpha
Helix 90	AJ9	G	35	37	Right-handed 310
Helix 91	AK1	G	38	47	Right-handed alpha
Helix 92	AK2	G	62	74	Right-handed alpha
Helix 93	AK3	G	95	111	Right-handed alpha
Helix 94	AK4	G	124	138	Right-handed alpha
Helix 95	AK5	G	139	142	Right-handed 310
Helix 96	AK6	G	154	177	Right-handed alpha
Helix 97	AK7	G	194	207	Right-handed alpha
Helix 98	AK8	G	221	235	Right-handed alpha
Helix 99	AK9	G	250	263	Right-handed alpha
Helix 100	AL1	G	279	290	Right-handed alpha
Helix 101	AL2	G	306	319	Right-handed alpha
Helix 102	AL3	G	334	347	Right-handed alpha
Helix 103	AL4	G	433	440	Right-handed alpha
Helix 104	AL5	G	442	449	Right-handed alpha
Helix 105	AL6	G	452	461	Right-handed alpha
Helix 106	AL7	G	465	479	Right-handed alpha
Helix 107	AL8	G	483	503	Right-handed alpha
Helix 108	AL9	G	508	520	Right-handed alpha
Helix 109	AM1	G	535	547	Right-handed alpha
Helix 110	AM2	G	555	564	Right-handed alpha
Helix 111	AM3	G	567	572	Right-handed alpha
Helix 112	AM4	G	573	587	Right-handed alpha

There are 8 sheets in PDB entry 9B62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	440	444	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	54	first strand
Strand 2	B	57	66	anti-parallel
Strand 3	B	10	17	parallel
Strand 4	B	85	91	parallel
Strand 5	B	117	122	parallel
Strand 6	B	145	148	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	30	first strand
Strand 2	C	36	46	anti-parallel
Strand 3	C	57	63	anti-parallel
Strand 4	C	74	77	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	65	first strand
Strand 2	D	86	92	anti-parallel
Strand 3	D	22	27	parallel
Strand 4	D	33	38	anti-parallel
Strand 5	E	2633	2637	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2981	2986	first strand
Strand 2	E	2969	2975	anti-parallel
Strand 3	E	2949	2963	anti-parallel
Strand 4	E	2930	2944	anti-parallel
Strand 5	E	3016	3023	anti-parallel
Strand 6	E	3002	3009	anti-parallel
Strand 7	E	2994	2995	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	54	first strand
Strand 2	F	57	66	anti-parallel
Strand 3	F	10	17	parallel
Strand 4	F	85	91	parallel
Strand 5	F	117	122	parallel
Strand 6	F	145	148	parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	24	first strand
Strand 2	G	54	55	parallel
Strand 3	G	81	83	parallel
Strand 4	G	116	118	parallel
Strand 5	G	146	148	parallel
Strand 6	G	184	186	parallel
Strand 7	G	212	214	parallel
Strand 8	G	240	242	parallel
Strand 9	G	268	270	parallel
Strand 10	G	297	299	parallel
Strand 11	G	325	327	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	32	first strand
Strand 2	G	60	61	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B62

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B62