Analysis of interatomic Contacts of Structural Units in PDB entry:
9B63

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B63 entry

There are 8 chains in PDB entry 9B63 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ASP 5	ALA 214
F	ASP 5	ALA 214
C	LYS 511	MET 825
B	GLN 508	MET 825
A	LYS 511	MET 825
D	GLN 508	MET 825
E	LEU 3	ALA 214
G	LEU 3	ALA 214

There are 47 helices in PDB entry 9B63. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	5	30	Right-handed alpha
Helix 2	AA2	H	92	105	Right-handed alpha
Helix 3	AA3	H	105	124	Right-handed alpha
Helix 4	AA4	H	125	127	Right-handed 310
Helix 5	AA5	H	132	162	Right-handed alpha
Helix 6	AA6	H	177	214	Right-handed alpha
Helix 7	AA7	F	6	30	Right-handed alpha
Helix 8	AA8	F	92	105	Right-handed alpha
Helix 9	AA9	F	105	126	Right-handed alpha
Helix 10	AB1	F	132	162	Right-handed alpha
Helix 11	AB2	F	177	214	Right-handed alpha
Helix 12	AB3	C	515	519	Right-handed 310
Helix 13	AB4	C	522	546	Right-handed alpha
Helix 14	AB5	C	547	551	Right-handed 310
Helix 15	AB6	C	572	585	Right-handed alpha
Helix 16	AB7	C	595	629	Right-handed alpha
Helix 17	AB8	C	788	791	Right-handed 310
Helix 18	AB9	C	792	825	Right-handed alpha
Helix 19	AC1	B	515	519	Right-handed 310
Helix 20	AC2	B	522	546	Right-handed alpha
Helix 21	AC3	B	547	551	Right-handed 310
Helix 22	AC4	B	572	585	Right-handed alpha
Helix 23	AC5	B	595	626	Right-handed alpha
Helix 24	AC6	B	788	791	Right-handed 310
Helix 25	AC7	B	792	825	Right-handed alpha
Helix 26	AC8	A	515	519	Right-handed 310
Helix 27	AC9	A	522	546	Right-handed alpha
Helix 28	AD1	A	547	551	Right-handed 310
Helix 29	AD2	A	572	585	Right-handed alpha
Helix 30	AD3	A	595	629	Right-handed alpha
Helix 31	AD4	A	788	825	Right-handed alpha
Helix 32	AD5	D	515	519	Right-handed 310
Helix 33	AD6	D	522	546	Right-handed alpha
Helix 34	AD7	D	547	551	Right-handed 310
Helix 35	AD8	D	572	585	Right-handed alpha
Helix 36	AD9	D	595	626	Right-handed alpha
Helix 37	AE1	D	788	825	Right-handed alpha
Helix 38	AE2	E	6	30	Right-handed alpha
Helix 39	AE3	E	92	105	Right-handed alpha
Helix 40	AE4	E	105	125	Right-handed alpha
Helix 41	AE5	E	132	161	Right-handed alpha
Helix 42	AE6	E	177	214	Right-handed alpha
Helix 43	AE7	G	6	30	Right-handed alpha
Helix 44	AE8	G	92	105	Right-handed alpha
Helix 45	AE9	G	105	125	Right-handed alpha
Helix 46	AF1	G	132	161	Right-handed alpha
Helix 47	AF2	G	177	214	Right-handed alpha

There are 4 sheets in PDB entry 9B63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	65	68	anti-parallel
Strand 3	H	57	61	anti-parallel
Strand 4	H	34	38	anti-parallel
Strand 5	H	174	176	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	79	first strand
Strand 2	F	65	68	anti-parallel
Strand 3	F	57	61	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	175	176	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	79	first strand
Strand 2	E	65	68	anti-parallel
Strand 3	E	57	61	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	175	176	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	79	first strand
Strand 2	G	65	68	anti-parallel
Strand 3	G	57	61	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B63

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B63