Analysis of interatomic Contacts of Structural Units in PDB entry:
9B6M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B6M entry

There are 2 chains in PDB entry 9B6M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 390
B	ASP 3	ASP 832

There are 30 helices in PDB entry 9B6M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	95	Right-handed alpha
Helix 2	AA2	A	95	108	Right-handed alpha
Helix 3	AA3	A	195	212	Right-handed alpha
Helix 4	AA4	A	238	245	Right-handed alpha
Helix 5	AA5	A	261	274	Right-handed alpha
Helix 6	AA6	A	276	291	Right-handed alpha
Helix 7	AA7	A	300	315	Right-handed alpha
Helix 8	AA8	A	319	328	Right-handed alpha
Helix 9	AA9	A	350	355	Right-handed alpha
Helix 10	AB1	B	19	25	Right-handed alpha
Helix 11	AB2	B	72	79	Right-handed alpha
Helix 12	AB3	B	99	109	Right-handed alpha
Helix 13	AB4	B	118	126	Right-handed alpha
Helix 14	AB5	B	134	154	Right-handed alpha
Helix 15	AB6	B	170	174	Right-handed 310
Helix 16	AB7	B	184	187	Right-handed 310
Helix 17	AB8	B	188	193	Right-handed alpha
Helix 18	AB9	B	197	201	Right-handed 310
Helix 19	AC1	B	223	257	Right-handed alpha
Helix 20	AC2	B	257	290	Right-handed alpha
Helix 21	AC3	B	303	340	Right-handed alpha
Helix 22	AC4	B	340	370	Right-handed alpha
Helix 23	AC5	B	380	388	Right-handed alpha
Helix 24	AC6	B	395	400	Right-handed alpha
Helix 25	AC7	B	406	410	Right-handed 310
Helix 26	AC8	B	414	420	Right-handed alpha
Helix 27	AC9	B	475	481	Right-handed 310
Helix 28	AD1	B	497	504	Right-handed alpha
Helix 29	AD2	B	548	552	Right-handed 310
Helix 30	AD3	B	623	635	Right-handed alpha

There are 15 sheets in PDB entry 9B6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	30	37	anti-parallel
Strand 3	A	40	42	anti-parallel
Strand 4	A	140	143	parallel
Strand 5	A	177	180	parallel
Strand 6	A	153	156	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	120	121	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	189	first strand
Strand 2	A	343	348	anti-parallel
Strand 3	A	372	373	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	237	first strand
Strand 2	A	222	226	anti-parallel
Strand 3	B	15	17	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	9	first strand
Strand 2	A	384	389	anti-parallel
Strand 3	B	64	66	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	113	115	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	161	first strand
Strand 2	B	164	169	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	434	first strand
Strand 2	B	421	428	anti-parallel
Strand 3	B	615	618	anti-parallel
Strand 4	B	486	492	anti-parallel
Strand 5	B	610	612	anti-parallel
Strand 6	B	457	461	anti-parallel
Strand 7	B	449	452	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	434	first strand
Strand 2	B	421	428	anti-parallel
Strand 3	B	615	618	anti-parallel
Strand 4	B	486	492	anti-parallel
Strand 5	B	558	560	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	469	471	anti-parallel
Strand 3	B	596	601	anti-parallel
Strand 4	B	509	513	anti-parallel
Strand 5	B	521	527	anti-parallel
Strand 6	B	530	536	anti-parallel
Strand 7	B	541	545	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	655	658	first strand
Strand 2	B	819	822	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	668	first strand
Strand 2	B	673	675	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	681	first strand
Strand 2	B	690	691	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	699	703	first strand
Strand 2	B	720	724	anti-parallel
Strand 3	B	729	731	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	763	first strand
Strand 2	B	772	775	anti-parallel
Strand 3	B	789	796	anti-parallel
Strand 4	B	799	804	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B6M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B6M