Analysis of interatomic Contacts of Structural Units in PDB entry:
9B6N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B6N entry

There are 5 chains in PDB entry 9B6N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 228	LEU 736
B	TRP 228	LEU 736
C	TRP 228	LEU 736
H	GLU 1	SER 127
L	GLN 1	THR 109

There are 26 helices in PDB entry 9B6N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	262	266	Right-handed alpha
Helix 2	AA2	A	288	293	Right-handed alpha
Helix 3	AA3	A	294	304	Right-handed alpha
Helix 4	AA4	A	396	400	Right-handed 310
Helix 5	AA5	A	492	496	Right-handed 310
Helix 6	AA6	A	554	556	Right-handed 310
Helix 7	AA7	A	563	568	Right-handed 310
Helix 8	AA8	B	252	256	Right-handed 310
Helix 9	AA9	B	262	266	Right-handed alpha
Helix 10	AB1	B	288	293	Right-handed alpha
Helix 11	AB2	B	294	304	Right-handed alpha
Helix 12	AB3	B	396	400	Right-handed 310
Helix 13	AB4	B	431	435	Right-handed 310
Helix 14	AB5	B	492	496	Right-handed 310
Helix 15	AB6	B	554	556	Right-handed 310
Helix 16	AB7	B	563	567	Right-handed 310
Helix 17	AB8	C	252	256	Right-handed 310
Helix 18	AB9	C	262	266	Right-handed alpha
Helix 19	AC1	C	288	293	Right-handed alpha
Helix 20	AC2	C	294	304	Right-handed alpha
Helix 21	AC3	C	355	359	Right-handed 310
Helix 22	AC4	C	396	400	Right-handed 310
Helix 23	AC5	C	431	435	Right-handed 310
Helix 24	AC6	C	563	569	Right-handed 310
Helix 25	AC7	H	64	67	Right-handed 310
Helix 26	AC8	H	89	93	Right-handed 310

There are 42 sheets in PDB entry 9B6N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	235	first strand
Strand 2	A	238	249	anti-parallel
Strand 3	A	675	689	anti-parallel
Strand 4	A	305	322	anti-parallel
Strand 5	A	414	416	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	373	first strand
Strand 2	A	238	249	parallel
Strand 3	A	675	689	anti-parallel
Strand 4	A	305	322	anti-parallel
Strand 5	A	423	424	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	261	first strand
Strand 2	A	275	283	anti-parallel
Strand 3	A	376	380	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	261	first strand
Strand 2	A	275	283	anti-parallel
Strand 3	A	647	651	anti-parallel
Strand 4	A	342	346	anti-parallel
Strand 5	A	403	404	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	A	733	734	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	451	first strand
Strand 2	A	459	465	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	480	first strand
Strand 2	A	605	607	parallel
Strand 3	B	627	629	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	484	first strand
Strand 2	A	598	599	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	534	536	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	517	first strand
Strand 2	A	508	511	anti-parallel
Strand 3	C	578	581	anti-parallel
Strand 4	C	593	596	anti-parallel
Strand 5	H	110	112	anti-parallel
Strand 6	H	105	107	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	544	first strand
Strand 2	A	558	560	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	596	first strand
Strand 2	A	578	581	anti-parallel
Strand 3	B	508	511	anti-parallel
Strand 4	B	514	517	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	621	first strand
Strand 2	A	638	640	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	629	first strand
Strand 2	C	605	607	anti-parallel
Strand 3	C	479	480	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	235	first strand
Strand 2	B	238	249	anti-parallel
Strand 3	B	371	373	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	235	first strand
Strand 2	B	238	249	anti-parallel
Strand 3	B	675	689	anti-parallel
Strand 4	B	305	322	anti-parallel
Strand 5	B	414	416	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	261	first strand
Strand 2	B	275	283	anti-parallel
Strand 3	B	376	380	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	261	first strand
Strand 2	B	275	283	anti-parallel
Strand 3	B	646	651	anti-parallel
Strand 4	B	342	347	anti-parallel
Strand 5	B	403	404	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	428	first strand
Strand 2	B	733	734	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	451	first strand
Strand 2	B	459	465	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	480	first strand
Strand 2	B	605	607	parallel
Strand 3	C	627	629	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	490	first strand
Strand 2	B	534	536	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	544	first strand
Strand 2	B	558	560	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	596	first strand
Strand 2	B	578	581	anti-parallel
Strand 3	C	508	511	anti-parallel
Strand 4	C	514	517	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	619	621	first strand
Strand 2	B	638	640	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	235	first strand
Strand 2	C	238	249	anti-parallel
Strand 3	C	675	689	anti-parallel
Strand 4	C	305	322	anti-parallel
Strand 5	C	414	416	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	373	first strand
Strand 2	C	238	249	parallel
Strand 3	C	675	689	anti-parallel
Strand 4	C	305	322	anti-parallel
Strand 5	C	423	424	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	261	first strand
Strand 2	C	275	283	anti-parallel
Strand 3	C	376	381	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	261	first strand
Strand 2	C	275	283	anti-parallel
Strand 3	C	646	651	anti-parallel
Strand 4	C	342	347	anti-parallel
Strand 5	C	403	404	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	428	first strand
Strand 2	C	733	734	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	451	first strand
Strand 2	C	459	465	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	484	first strand
Strand 2	C	598	599	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	490	first strand
Strand 2	C	534	536	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	542	544	first strand
Strand 2	C	558	560	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	619	621	first strand
Strand 2	C	638	640	parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	80	86	anti-parallel
Strand 4	H	70	75	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	124	125	parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	95	100	anti-parallel
Strand 5	H	121	122	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	18	23	anti-parallel
Strand 3	L	74	79	anti-parallel
Strand 4	L	66	67	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	18	23	anti-parallel
Strand 3	L	74	79	anti-parallel
Strand 4	L	70	71	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	10	first strand
Strand 2	L	106	108	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	50	anti-parallel
Strand 6	L	56	58	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	10	first strand
Strand 2	L	106	108	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	100	102	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B6N

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B6N