Analysis of interatomic Contacts of Structural Units in PDB entry:
9B6T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B6T entry

There are 8 chains in PDB entry 9B6T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 249	GLN 673
B	GLN 430	VAL 606
C	CYS 230	LEU 736
D	LEU 249	GLN 673
E	GLN 430	VAL 606
F	CYS 230	LEU 736
H	GLN 20	SER 139
L	ALA 23	LEU 130

There are 25 helices in PDB entry 9B6T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	269	273	Right-handed 310
Helix 2	AA2	A	355	359	Right-handed 310
Helix 3	AA3	A	396	400	Right-handed 310
Helix 4	AA4	A	492	496	Right-handed 310
Helix 5	AA5	B	431	435	Right-handed 310
Helix 6	AA6	C	288	292	Right-handed 310
Helix 7	AA7	C	294	304	Right-handed alpha
Helix 8	AA8	C	355	359	Right-handed 310
Helix 9	AA9	C	431	435	Right-handed 310
Helix 10	AB1	C	554	556	Right-handed 310
Helix 11	AB2	C	563	569	Right-handed 310
Helix 12	AB3	D	251	255	Right-handed 310
Helix 13	AB4	D	263	266	Right-handed 310
Helix 14	AB5	D	355	359	Right-handed 310
Helix 15	AB6	D	396	400	Right-handed 310
Helix 16	AB7	D	492	496	Right-handed 310
Helix 17	AB8	E	431	435	Right-handed 310
Helix 18	AB9	F	288	292	Right-handed 310
Helix 19	AC1	F	294	304	Right-handed alpha
Helix 20	AC2	F	355	359	Right-handed 310
Helix 21	AC3	F	492	496	Right-handed 310
Helix 22	AC4	F	563	569	Right-handed 310
Helix 23	AC5	H	80	83	Right-handed 310
Helix 24	AC6	H	105	109	Right-handed 310
Helix 25	AC7	L	100	104	Right-handed 310

There are 38 sheets in PDB entry 9B6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	261	first strand
Strand 2	A	275	283	anti-parallel
Strand 3	A	646	649	anti-parallel
Strand 4	A	346	347	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	261	first strand
Strand 2	A	275	283	anti-parallel
Strand 3	A	376	380	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	484	first strand
Strand 2	A	598	599	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	517	first strand
Strand 2	A	508	511	anti-parallel
Strand 3	C	578	581	anti-parallel
Strand 4	C	593	595	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	581	first strand
Strand 2	A	593	595	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	629	first strand
Strand 2	C	605	607	anti-parallel
Strand 3	C	479	480	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	449	first strand
Strand 2	B	462	465	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	480	first strand
Strand 2	B	605	606	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	484	first strand
Strand 2	B	598	599	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	596	first strand
Strand 2	B	578	581	anti-parallel
Strand 3	C	508	511	anti-parallel
Strand 4	C	514	517	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	235	first strand
Strand 2	C	238	249	anti-parallel
Strand 3	C	371	373	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	235	first strand
Strand 2	C	238	249	anti-parallel
Strand 3	C	675	689	anti-parallel
Strand 4	C	305	310	anti-parallel
Strand 5	C	423	424	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	428	first strand
Strand 2	C	733	734	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	451	first strand
Strand 2	C	459	465	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	484	first strand
Strand 2	C	598	599	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	490	first strand
Strand 2	C	534	536	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	542	544	first strand
Strand 2	C	558	560	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	261	first strand
Strand 2	D	275	283	anti-parallel
Strand 3	D	646	649	anti-parallel
Strand 4	D	346	347	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	261	first strand
Strand 2	D	275	283	anti-parallel
Strand 3	D	376	380	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	517	first strand
Strand 2	D	508	511	anti-parallel
Strand 3	F	578	581	anti-parallel
Strand 4	F	593	596	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	578	581	first strand
Strand 2	D	593	596	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	627	629	first strand
Strand 2	F	605	607	anti-parallel
Strand 3	F	479	480	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	445	451	first strand
Strand 2	E	459	465	anti-parallel
Strand 3	F	553	554	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	483	484	first strand
Strand 2	E	598	599	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	593	596	first strand
Strand 2	E	578	581	anti-parallel
Strand 3	F	508	511	anti-parallel
Strand 4	F	514	517	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	231	235	first strand
Strand 2	F	238	249	anti-parallel
Strand 3	F	371	373	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	231	235	first strand
Strand 2	F	238	249	anti-parallel
Strand 3	F	675	689	anti-parallel
Strand 4	F	305	310	anti-parallel
Strand 5	F	423	424	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	426	428	first strand
Strand 2	F	732	734	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	445	451	first strand
Strand 2	F	459	465	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	483	484	first strand
Strand 2	F	598	599	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	488	490	first strand
Strand 2	F	534	536	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	542	544	first strand
Strand 2	F	558	560	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	26	first strand
Strand 2	H	37	44	anti-parallel
Strand 3	H	96	101	anti-parallel
Strand 4	H	86	91	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	H	133	137	parallel
Strand 3	H	110	117	anti-parallel
Strand 4	H	52	58	anti-parallel
Strand 5	H	65	71	anti-parallel
Strand 6	H	76	78	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	H	133	137	parallel
Strand 3	H	110	117	anti-parallel
Strand 4	H	126	129	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	125	129	parallel
Strand 3	L	106	113	anti-parallel
Strand 4	L	54	59	anti-parallel
Strand 5	L	66	69	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	125	129	parallel
Strand 3	L	106	113	anti-parallel
Strand 4	L	118	121	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	38	43	first strand
Strand 2	L	91	96	anti-parallel
Strand 3	L	83	88	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B6T

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B6T