Analysis of interatomic Contacts of Structural Units in PDB entry:
9B6W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B6W entry

There are 9 chains in PDB entry 9B6W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	LYS 391
B	ALA 1	LYS 391
C	ALA 1	LYS 391
D	GLU 1	SER 120
E	GLU 1	LYS 107
F	GLU 1	SER 120
G	GLU 1	LYS 107
H	GLU 1	SER 120
I	GLU 1	LYS 107

There are 41 helices in PDB entry 9B6W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed 310
Helix 2	AA2	A	74	78	Right-handed 310
Helix 3	AA3	A	83	91	Right-handed 310
Helix 4	AA4	A	100	104	Right-handed 310
Helix 5	AA5	A	131	134	Right-handed 310
Helix 6	AA6	A	151	156	Right-handed alpha
Helix 7	AA7	A	189	191	Right-handed 310
Helix 8	AA8	A	207	213	Right-handed alpha
Helix 9	AA9	A	227	230	Right-handed 310
Helix 10	AB1	A	250	258	Right-handed alpha
Helix 11	AB2	A	259	261	Right-handed 310
Helix 12	AB3	A	292	297	Right-handed 310
Helix 13	AB4	B	1	6	Right-handed 310
Helix 14	AB5	B	82	91	Right-handed 310
Helix 15	AB6	B	100	104	Right-handed 310
Helix 16	AB7	B	131	134	Right-handed 310
Helix 17	AB8	B	148	150	Right-handed 310
Helix 18	AB9	B	151	156	Right-handed alpha
Helix 19	AC1	B	189	191	Right-handed 310
Helix 20	AC2	B	207	213	Right-handed alpha
Helix 21	AC3	B	250	258	Right-handed alpha
Helix 22	AC4	B	259	261	Right-handed 310
Helix 23	AC5	C	82	87	Right-handed alpha
Helix 24	AC6	C	100	104	Right-handed 310
Helix 25	AC7	C	131	135	Right-handed 310
Helix 26	AC8	C	148	150	Right-handed 310
Helix 27	AC9	C	151	156	Right-handed alpha
Helix 28	AD1	C	162	166	Right-handed 310
Helix 29	AD2	C	189	191	Right-handed 310
Helix 30	AD3	C	207	213	Right-handed alpha
Helix 31	AD4	C	227	230	Right-handed 310
Helix 32	AD5	C	250	258	Right-handed alpha
Helix 33	AD6	C	259	261	Right-handed 310
Helix 34	AD7	D	28	32	Right-handed 310
Helix 35	AD8	D	60	64	Right-handed 310
Helix 36	AD9	E	79	83	Right-handed 310
Helix 37	AE1	F	28	32	Right-handed 310
Helix 38	AE2	F	86	90	Right-handed 310
Helix 39	AE3	H	28	32	Right-handed 310
Helix 40	AE4	H	86	90	Right-handed 310
Helix 41	AE5	I	79	83	Right-handed 310

There are 35 sheets in PDB entry 9B6W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	29	34	parallel
Strand 3	A	41	51	anti-parallel
Strand 4	A	273	276	anti-parallel
Strand 5	A	262	266	anti-parallel
Strand 6	A	201	206	anti-parallel
Strand 7	A	193	198	anti-parallel
Strand 8	A	109	129	anti-parallel
Strand 9	A	136	143	first strand
Strand 10	A	157	162	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	193	198	anti-parallel
Strand 4	A	201	206	anti-parallel
Strand 5	A	262	266	anti-parallel
Strand 6	A	273	276	anti-parallel
Strand 7	A	41	51	anti-parallel
Strand 8	A	55	72	first strand
Strand 9	A	217	219	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	280	286	anti-parallel
Strand 3	A	180	182	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	176	178	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	244	246	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	312	first strand
Strand 2	A	318	323	anti-parallel
Strand 3	A	362	368	anti-parallel
Strand 4	A	348	349	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	337	first strand
Strand 2	A	373	378	anti-parallel
Strand 3	A	385	390	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	30	35	parallel
Strand 3	B	38	51	anti-parallel
Strand 4	B	270	276	anti-parallel
Strand 5	B	262	267	anti-parallel
Strand 6	B	201	206	anti-parallel
Strand 7	B	193	198	anti-parallel
Strand 8	B	109	129	anti-parallel
Strand 9	B	136	143	first strand
Strand 10	B	157	162	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	99	first strand
Strand 2	B	109	129	anti-parallel
Strand 3	B	193	198	anti-parallel
Strand 4	B	201	206	anti-parallel
Strand 5	B	262	267	anti-parallel
Strand 6	B	270	276	anti-parallel
Strand 7	B	38	51	anti-parallel
Strand 8	B	54	73	first strand
Strand 9	B	217	218	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	26	first strand
Strand 2	B	280	286	anti-parallel
Strand 3	B	176	182	anti-parallel
Strand 4	B	167	172	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	244	246	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	312	first strand
Strand 2	B	318	323	anti-parallel
Strand 3	B	363	368	anti-parallel
Strand 4	B	348	349	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	331	first strand
Strand 2	B	355	356	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	337	first strand
Strand 2	B	373	378	anti-parallel
Strand 3	B	385	390	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	51	anti-parallel
Strand 4	C	273	276	anti-parallel
Strand 5	C	262	266	anti-parallel
Strand 6	C	202	206	anti-parallel
Strand 7	C	193	197	anti-parallel
Strand 8	C	109	129	anti-parallel
Strand 9	C	136	143	first strand
Strand 10	C	157	161	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	99	first strand
Strand 2	C	109	129	anti-parallel
Strand 3	C	193	197	anti-parallel
Strand 4	C	202	206	anti-parallel
Strand 5	C	262	266	anti-parallel
Strand 6	C	273	276	anti-parallel
Strand 7	C	38	51	anti-parallel
Strand 8	C	54	73	first strand
Strand 9	C	217	219	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	280	286	anti-parallel
Strand 3	C	176	183	anti-parallel
Strand 4	C	168	172	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	234	first strand
Strand 2	C	244	246	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	299	first strand
Strand 2	C	330	331	parallel
Strand 3	C	355	356	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	312	first strand
Strand 2	C	318	323	anti-parallel
Strand 3	C	363	368	anti-parallel
Strand 4	C	348	349	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	337	first strand
Strand 2	C	373	378	anti-parallel
Strand 3	C	385	390	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	77	83	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	118	119	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	58	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	34	39	anti-parallel
Strand 4	D	92	97	anti-parallel
Strand 5	D	110	111	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	58	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	34	39	anti-parallel
Strand 4	D	92	97	anti-parallel
Strand 5	D	115	116	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	65	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	45	50	anti-parallel
Strand 3	E	33	38	anti-parallel
Strand 4	E	85	90	anti-parallel
Strand 5	E	97	98	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	68	72	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	115	119	parallel
Strand 3	F	91	97	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	57	58	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	6	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	54	first strand
Strand 2	G	45	50	anti-parallel
Strand 3	G	33	38	anti-parallel
Strand 4	G	85	90	anti-parallel
Strand 5	G	97	103	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	83	anti-parallel
Strand 4	H	69	72	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	91	95	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	58	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	13	first strand
Strand 2	I	101	106	parallel
Strand 3	I	84	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	50	anti-parallel
Strand 6	I	53	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B6W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B6W