Analysis of interatomic Contacts of Structural Units in PDB entry:
9B7D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B7D entry

There are 4 chains in PDB entry 9B7D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	ASN 192
B	ASN 2	THR 192
C	MET 1	ASN 192
D	MET 1	THR 192

There are 29 helices in PDB entry 9B7D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	50	64	Right-handed alpha
Helix 3	AA3	A	75	78	Right-handed 310
Helix 4	AA4	A	79	93	Right-handed alpha
Helix 5	AA5	A	117	120	Right-handed 310
Helix 6	AA6	A	170	172	Right-handed 310
Helix 7	AA7	A	182	192	Right-handed alpha
Helix 8	AA8	B	4	16	Right-handed alpha
Helix 9	AA9	B	21	25	Right-handed 310
Helix 10	AB1	B	26	30	Right-handed 310
Helix 11	AB2	B	31	44	Right-handed alpha
Helix 12	AB3	B	51	68	Right-handed alpha
Helix 13	AB4	B	78	80	Right-handed 310
Helix 14	AB5	B	177	187	Right-handed alpha
Helix 15	AB6	C	12	26	Right-handed alpha
Helix 16	AB7	C	50	64	Right-handed alpha
Helix 17	AB8	C	75	78	Right-handed 310
Helix 18	AB9	C	79	93	Right-handed alpha
Helix 19	AC1	C	117	120	Right-handed 310
Helix 20	AC2	C	159	163	Right-handed 310
Helix 21	AC3	C	170	172	Right-handed 310
Helix 22	AC4	C	182	192	Right-handed alpha
Helix 23	AC5	D	4	16	Right-handed alpha
Helix 24	AC6	D	21	25	Right-handed 310
Helix 25	AC7	D	26	30	Right-handed 310
Helix 26	AC8	D	31	44	Right-handed alpha
Helix 27	AC9	D	51	68	Right-handed alpha
Helix 28	AD1	D	78	80	Right-handed 310
Helix 29	AD2	D	178	187	Right-handed alpha

There are 10 sheets in PDB entry 9B7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	177	first strand
Strand 2	A	95	100	parallel
Strand 3	A	67	72	parallel
Strand 4	A	4	8	parallel
Strand 5	A	32	34	parallel
Strand 6	B	123	125	anti-parallel
Strand 7	B	113	116	anti-parallel
Strand 8	B	147	154	parallel
Strand 9	B	172	175	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	145	first strand
Strand 2	A	132	138	anti-parallel
Strand 3	A	152	153	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	145	first strand
Strand 2	A	132	138	anti-parallel
Strand 3	A	122	126	anti-parallel
Strand 4	A	166	168	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	89	92	anti-parallel
Strand 3	B	98	101	anti-parallel
Strand 4	B	108	109	anti-parallel
Strand 5	B	135	137	anti-parallel
Strand 6	B	188	189	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	131	132	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	177	first strand
Strand 2	C	95	100	parallel
Strand 3	C	67	72	parallel
Strand 4	C	3	8	parallel
Strand 5	C	31	34	parallel
Strand 6	D	123	125	anti-parallel
Strand 7	D	113	116	anti-parallel
Strand 8	D	147	154	parallel
Strand 9	D	172	175	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	145	first strand
Strand 2	C	132	139	anti-parallel
Strand 3	C	152	153	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	145	first strand
Strand 2	C	132	139	anti-parallel
Strand 3	C	122	126	anti-parallel
Strand 4	C	167	168	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	89	92	anti-parallel
Strand 3	D	98	101	anti-parallel
Strand 4	D	108	109	anti-parallel
Strand 5	D	135	137	anti-parallel
Strand 6	D	188	189	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	131	132	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B7D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B7D