Analysis of interatomic Contacts of Structural Units in PDB entry:
9B7R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B7R entry

There are 8 chains in PDB entry 9B7R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 252	PHE 670
B	ILE 440	GLY 600
C	ASN 287	LEU 736
D	TYR 252	PHE 670
E	ILE 440	GLY 600
F	ASN 287	LEU 736
H	GLU 20	SER 147
L	GLU 23	LEU 127

There are 16 helices in PDB entry 9B7R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	262	266	Right-handed alpha
Helix 2	AA2	A	396	400	Right-handed 310
Helix 3	AA3	C	288	293	Right-handed alpha
Helix 4	AA4	C	294	304	Right-handed alpha
Helix 5	AA5	C	431	435	Right-handed 310
Helix 6	AA6	C	492	496	Right-handed 310
Helix 7	AA7	C	564	568	Right-handed 310
Helix 8	AA8	D	252	256	Right-handed 310
Helix 9	AA9	D	263	265	Right-handed 310
Helix 10	AB1	D	396	400	Right-handed 310
Helix 11	AB2	F	288	293	Right-handed alpha
Helix 12	AB3	F	294	304	Right-handed alpha
Helix 13	AB4	F	492	496	Right-handed 310
Helix 14	AB5	F	563	569	Right-handed 310
Helix 15	AB6	H	106	110	Right-handed 310
Helix 16	AB7	L	101	105	Right-handed 310

There are 28 sheets in PDB entry 9B7R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	261	first strand
Strand 2	A	275	279	anti-parallel
Strand 3	A	377	380	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	517	first strand
Strand 2	A	508	511	anti-parallel
Strand 3	C	578	581	anti-parallel
Strand 4	C	593	596	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	447	first strand
Strand 2	B	462	465	anti-parallel
Strand 3	C	553	554	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	596	first strand
Strand 2	B	578	581	anti-parallel
Strand 3	C	508	510	anti-parallel
Strand 4	C	515	517	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	307	first strand
Strand 2	C	688	689	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	428	first strand
Strand 2	C	733	734	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	447	first strand
Strand 2	C	463	465	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	480	first strand
Strand 2	C	605	606	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	484	first strand
Strand 2	C	598	599	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	490	first strand
Strand 2	C	534	536	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	261	first strand
Strand 2	D	275	278	anti-parallel
Strand 3	D	378	381	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	383	384	first strand
Strand 2	D	387	388	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	508	511	first strand
Strand 2	D	514	517	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	445	451	first strand
Strand 2	E	459	465	anti-parallel
Strand 3	F	553	554	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	593	596	first strand
Strand 2	E	578	581	anti-parallel
Strand 3	F	508	510	anti-parallel
Strand 4	F	515	517	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	305	307	first strand
Strand 2	F	688	689	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	427	428	first strand
Strand 2	F	733	734	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	445	451	first strand
Strand 2	F	459	465	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	479	480	first strand
Strand 2	F	605	606	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	488	490	first strand
Strand 2	F	534	536	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	542	544	first strand
Strand 2	F	558	560	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	578	581	first strand
Strand 2	F	593	596	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	26	first strand
Strand 2	H	36	43	anti-parallel
Strand 3	H	97	103	anti-parallel
Strand 4	H	87	92	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	H	141	145	parallel
Strand 3	H	111	119	anti-parallel
Strand 4	H	53	58	anti-parallel
Strand 5	H	64	66	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	H	141	145	parallel
Strand 3	H	111	119	anti-parallel
Strand 4	H	133	137	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	68	70	first strand
Strand 2	H	77	79	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	28	first strand
Strand 2	L	41	47	anti-parallel
Strand 3	L	92	97	anti-parallel
Strand 4	L	85	89	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	75	76	first strand
Strand 2	L	67	71	anti-parallel
Strand 3	L	55	60	anti-parallel
Strand 4	L	107	112	anti-parallel
Strand 5	L	120	121	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B7R

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B7R