Analysis of interatomic Contacts of Structural Units in PDB entry:
9B80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B80 entry

There are 2 chains in PDB entry 9B80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 857	ALA 2112
B	PRO 857	ALA 2112

There are 83 helices in PDB entry 9B80. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	872	876	Right-handed 310
Helix 2	AA2	A	887	904	Right-handed alpha
Helix 3	AA3	A	906	910	Right-handed 310
Helix 4	AA4	A	965	970	Right-handed 310
Helix 5	AA5	A	987	998	Right-handed alpha
Helix 6	AA6	A	1003	1006	Right-handed 310
Helix 7	AA7	A	1025	1041	Right-handed alpha
Helix 8	AA8	A	1058	1065	Right-handed alpha
Helix 9	AA9	A	1132	1144	Right-handed alpha
Helix 10	AB1	A	1221	1235	Right-handed alpha
Helix 11	AB2	A	1251	1254	Right-handed 310
Helix 12	AB3	A	1255	1260	Right-handed alpha
Helix 13	AB4	A	1282	1287	Right-handed alpha
Helix 14	AB5	A	1380	1385	Right-handed alpha
Helix 15	AB6	A	1419	1422	Right-handed 310
Helix 16	AB7	A	1423	1432	Right-handed alpha
Helix 17	AB8	A	1452	1462	Right-handed alpha
Helix 18	AB9	A	1489	1499	Right-handed alpha
Helix 19	AC1	A	1572	1581	Right-handed alpha
Helix 20	AC2	A	1584	1588	Right-handed 310
Helix 21	AC3	A	1629	1631	Right-handed 310
Helix 22	AC4	A	1641	1646	Right-handed alpha
Helix 23	AC5	A	1648	1660	Right-handed alpha
Helix 24	AC6	A	1678	1692	Right-handed alpha
Helix 25	AC7	A	1701	1712	Right-handed alpha
Helix 26	AC8	A	1716	1718	Right-handed 310
Helix 27	AC9	A	1726	1736	Right-handed alpha
Helix 28	AD1	A	1752	1758	Right-handed alpha
Helix 29	AD2	A	1771	1776	Right-handed alpha
Helix 30	AD3	A	1783	1788	Right-handed 310
Helix 31	AD4	A	1795	1801	Right-handed 310
Helix 32	AD5	A	1803	1820	Right-handed alpha
Helix 33	AD6	A	1835	1845	Right-handed alpha
Helix 34	AD7	A	1895	1907	Right-handed alpha
Helix 35	AD8	A	1922	1935	Right-handed alpha
Helix 36	AD9	A	1948	1963	Right-handed alpha
Helix 37	AE1	A	1980	1984	Right-handed 310
Helix 38	AE2	A	1985	1992	Right-handed alpha
Helix 39	AE3	A	1993	2010	Right-handed alpha
Helix 40	AE4	A	2023	2025	Right-handed 310
Helix 41	AE5	A	2031	2051	Right-handed alpha
Helix 42	AE6	A	2087	2100	Right-handed alpha
Helix 43	AE7	B	872	876	Right-handed 310
Helix 44	AE8	B	887	904	Right-handed alpha
Helix 45	AE9	B	906	910	Right-handed 310
Helix 46	AF1	B	965	970	Right-handed 310
Helix 47	AF2	B	987	998	Right-handed alpha
Helix 48	AF3	B	1003	1006	Right-handed 310
Helix 49	AF4	B	1025	1041	Right-handed alpha
Helix 50	AF5	B	1058	1065	Right-handed alpha
Helix 51	AF6	B	1132	1144	Right-handed alpha
Helix 52	AF7	B	1221	1235	Right-handed alpha
Helix 53	AF8	B	1251	1254	Right-handed 310
Helix 54	AF9	B	1255	1260	Right-handed alpha
Helix 55	AG1	B	1282	1287	Right-handed alpha
Helix 56	AG2	B	1380	1385	Right-handed alpha
Helix 57	AG3	B	1423	1432	Right-handed alpha
Helix 58	AG4	B	1452	1462	Right-handed alpha
Helix 59	AG5	B	1489	1499	Right-handed alpha
Helix 60	AG6	B	1572	1581	Right-handed alpha
Helix 61	AG7	B	1584	1588	Right-handed 310
Helix 62	AG8	B	1629	1631	Right-handed 310
Helix 63	AG9	B	1641	1646	Right-handed alpha
Helix 64	AH1	B	1648	1660	Right-handed alpha
Helix 65	AH2	B	1678	1692	Right-handed alpha
Helix 66	AH3	B	1701	1712	Right-handed alpha
Helix 67	AH4	B	1716	1718	Right-handed 310
Helix 68	AH5	B	1726	1736	Right-handed alpha
Helix 69	AH6	B	1752	1758	Right-handed alpha
Helix 70	AH7	B	1771	1776	Right-handed alpha
Helix 71	AH8	B	1783	1788	Right-handed 310
Helix 72	AH9	B	1795	1801	Right-handed 310
Helix 73	AI1	B	1803	1820	Right-handed alpha
Helix 74	AI2	B	1835	1845	Right-handed alpha
Helix 75	AI3	B	1895	1907	Right-handed alpha
Helix 76	AI4	B	1922	1935	Right-handed alpha
Helix 77	AI5	B	1948	1963	Right-handed alpha
Helix 78	AI6	B	1980	1984	Right-handed 310
Helix 79	AI7	B	1985	1992	Right-handed alpha
Helix 80	AI8	B	1993	2010	Right-handed alpha
Helix 81	AI9	B	2023	2025	Right-handed 310
Helix 82	AJ1	B	2031	2051	Right-handed alpha
Helix 83	AJ2	B	2087	2100	Right-handed alpha

There are 26 sheets in PDB entry 9B80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	860	864	first strand
Strand 2	A	931	938	anti-parallel
Strand 3	A	943	947	anti-parallel
Strand 4	A	952	960	anti-parallel
Strand 5	A	912	919	anti-parallel
Strand 6	A	1047	1057	anti-parallel
Strand 7	A	1092	1095	anti-parallel
Strand 8	A	1086	1089	anti-parallel
Strand 9	A	1074	1081	anti-parallel
Strand 10	A	1067	1068	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	985	986	first strand
Strand 2	A	1008	1011	anti-parallel
Strand 3	A	1017	1021	anti-parallel
Strand 4	A	1074	1081	anti-parallel
Strand 5	A	1086	1089	anti-parallel
Strand 6	A	1092	1095	anti-parallel
Strand 7	A	1047	1057	anti-parallel
Strand 8	A	1098	1101	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	879	first strand
Strand 2	A	1000	1001	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1113	1116	first strand
Strand 2	A	2105	2111	anti-parallel
Strand 3	A	2056	2060	parallel
Strand 4	A	2015	2021	parallel
Strand 5	A	1965	1970	parallel
Strand 6	A	1886	1890	parallel
Strand 7	A	1911	1915	parallel
Strand 8	A	1938	1942	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1113	1116	first strand
Strand 2	A	2105	2111	anti-parallel
Strand 3	A	2083	2084	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1118	1121	first strand
Strand 2	A	1510	1515	anti-parallel
Strand 3	A	1505	1507	anti-parallel
Strand 4	A	1470	1476	parallel
Strand 5	A	1441	1445	parallel
Strand 6	A	1413	1416	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1123	1127	first strand
Strand 2	A	1388	1394	parallel
Strand 3	A	1399	1403	anti-parallel
Strand 4	A	1314	1315	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1239	1245	first strand
Strand 2	A	1267	1273	parallel
Strand 3	A	1291	1293	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1525	1528	first strand
Strand 2	A	1873	1876	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1531	1535	first strand
Strand 2	A	1544	1548	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1625	1628	first strand
Strand 2	A	1562	1570	anti-parallel
Strand 3	A	1602	1606	anti-parallel
Strand 4	A	1612	1616	anti-parallel
Strand 5	A	1633	1635	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1625	1628	first strand
Strand 2	A	1562	1570	anti-parallel
Strand 3	A	1851	1855	anti-parallel
Strand 4	A	1828	1832	parallel

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There are 12 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1720	1722	first strand
Strand 2	A	1694	1699	parallel
Strand 3	A	1670	1673	parallel
Strand 4	A	1741	1746	parallel
Strand 5	A	1760	1768	parallel
Strand 6	A	1790	1793	parallel
Strand 7	B	1790	1793	anti-parallel
Strand 8	B	1760	1768	parallel
Strand 9	B	1741	1746	parallel
Strand 10	B	1670	1673	parallel
Strand 11	B	1694	1699	parallel
Strand 12	B	1720	1722	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1779	1781	first strand
Strand 2	B	1779	1781	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	860	864	first strand
Strand 2	B	931	938	anti-parallel
Strand 3	B	943	947	anti-parallel
Strand 4	B	952	960	anti-parallel
Strand 5	B	912	919	anti-parallel
Strand 6	B	1047	1057	anti-parallel
Strand 7	B	1092	1095	anti-parallel
Strand 8	B	1086	1089	anti-parallel
Strand 9	B	1074	1081	anti-parallel
Strand 10	B	1067	1068	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	985	986	first strand
Strand 2	B	1008	1011	anti-parallel
Strand 3	B	1017	1021	anti-parallel
Strand 4	B	1074	1081	anti-parallel
Strand 5	B	1086	1089	anti-parallel
Strand 6	B	1092	1095	anti-parallel
Strand 7	B	1047	1057	anti-parallel
Strand 8	B	1098	1101	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	878	879	first strand
Strand 2	B	1000	1001	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1113	1116	first strand
Strand 2	B	2105	2111	anti-parallel
Strand 3	B	2056	2060	parallel
Strand 4	B	2015	2021	parallel
Strand 5	B	1965	1970	parallel
Strand 6	B	1886	1890	parallel
Strand 7	B	1911	1915	parallel
Strand 8	B	1938	1942	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1113	1116	first strand
Strand 2	B	2105	2111	anti-parallel
Strand 3	B	2083	2084	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1118	1121	first strand
Strand 2	B	1510	1515	anti-parallel
Strand 3	B	1505	1507	anti-parallel
Strand 4	B	1470	1476	parallel
Strand 5	B	1441	1445	parallel
Strand 6	B	1413	1416	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1123	1127	first strand
Strand 2	B	1388	1394	parallel
Strand 3	B	1399	1403	anti-parallel
Strand 4	B	1314	1315	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1239	1245	first strand
Strand 2	B	1267	1273	parallel
Strand 3	B	1291	1293	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1525	1528	first strand
Strand 2	B	1873	1876	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1531	1535	first strand
Strand 2	B	1544	1548	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1625	1628	first strand
Strand 2	B	1562	1570	anti-parallel
Strand 3	B	1602	1606	anti-parallel
Strand 4	B	1612	1616	anti-parallel
Strand 5	B	1633	1635	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1625	1628	first strand
Strand 2	B	1562	1570	anti-parallel
Strand 3	B	1851	1855	anti-parallel
Strand 4	B	1828	1832	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B80

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B80