Analysis of interatomic Contacts of Structural Units in PDB entry:
9B89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9B89 entry

There are 4 chains in PDB entry 9B89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 742LEU 1223
B
 PHE 840CYS 1224
C
 G 1 U 5
C
 U 7 U 71
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9B89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
776 793Right-handed alpha
Helix 2
AA2
A
813 823Right-handed alpha
Helix 3
AA3
A
840 856Right-handed alpha
Helix 4
AA4
A
860 865Right-handed 310
Helix 5
AA5
A
910 930Right-handed alpha
Helix 6
AA6
A
973 977Right-handed 310
Helix 7
AA7
A
1021 1028Right-handed alpha
Helix 8
AA8
A
1035 1047Right-handed alpha
Helix 9
AA9
A
1052 1056Right-handed 310
Helix 10
AB1
A
1072 1081Right-handed alpha
Helix 11
AB2
A
1082 1085Right-handed 310
Helix 12
AB3
A
1089 1095Right-handed alpha
Helix 13
AB4
A
1157 1172Right-handed alpha
Helix 14
AB5
A
1176 1180Right-handed 310
Helix 15
AB6
A
1181 1189Right-handed alpha
Helix 16
AB7
A
1189 1207Right-handed alpha
Helix 17
AB8
A
1215 1220Right-handed alpha
Helix 18
AB9
B
841 856Right-handed alpha
Helix 19
AC1
B
895 899Right-handed 310
Helix 20
AC2
B
910 930Right-handed alpha
Helix 21
AC3
B
1035 1047Right-handed alpha
Helix 22
AC4
B
1049 1055Right-handed alpha
Helix 23
AC5
B
1072 1081Right-handed alpha
Helix 24
AC6
B
1082 1085Right-handed 310
Helix 25
AC7
B
1131 1133Right-handed 310
Helix 26
AC8
B
1157 1172Right-handed alpha
Helix 27
AC9
B
1181 1189Right-handed alpha
Helix 28
AD1
B
1189 1206Right-handed alpha
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There are 9 sheets in PDB entry 9B89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 750first strand
Strand 2
A
757 764anti-parallel
Strand 3
A
767 768anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 750first strand
Strand 2
A
757 764anti-parallel
Strand 3
A
772 774anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
806 807first strand
Strand 2
A
1007 1008parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1105 1108first strand
Strand 2
A
1064 1067parallel
Strand 3
A
956 961parallel
Strand 4
A
870 875anti-parallel
Strand 5
A
883 888anti-parallel
Strand 6
A
1124 1129anti-parallel
Strand 7
A
1137 1140anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
940 942first strand
Strand 2
A
949 951anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1011 1012first strand
Strand 2
A
1001 1004anti-parallel
Strand 3
A
1032 1034anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1105 1108first strand
Strand 2
B
1064 1067parallel
Strand 3
B
956 961parallel
Strand 4
B
869 875anti-parallel
Strand 5
B
883 889anti-parallel
Strand 6
B
1124 1129anti-parallel
Strand 7
B
1137 1140anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
940 942first strand
Strand 2
B
949 951anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1001 1003first strand
Strand 2
B
1010 1012anti-parallel
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