Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9B8E entry

There are 4 chains in PDB entry 9B8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 57ASN 158
A
 GLN 160VAL 284
B
 LYS 57ASN 158
B
 GLN 160VAL 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9B8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 83Right-handed alpha
Helix 2
AA2
A
86 104Right-handed alpha
Helix 3
AA3
A
115 117Right-handed 310
Helix 4
AA4
A
118 135Right-handed alpha
Helix 5
AA5
A
139 155Right-handed alpha
Helix 6
AA6
A
158 175Right-handed alpha
Helix 7
AA7
A
218 226Right-handed alpha
Helix 8
AA8
A
258 273Right-handed alpha
Helix 9
AA9
A
276 280Right-handed 310
Helix 10
AB1
B
65 83Right-handed alpha
Helix 11
AB2
B
86 104Right-handed alpha
Helix 12
AB3
B
115 117Right-handed 310
Helix 13
AB4
B
118 135Right-handed alpha
Helix 14
AB5
B
139 155Right-handed alpha
Helix 15
AB6
B
158 174Right-handed alpha
Helix 16
AB7
B
218 226Right-handed alpha
Helix 17
AB8
B
258 273Right-handed alpha
Helix 18
AB9
B
276 280Right-handed 310
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There are 2 sheets in PDB entry 9B8E. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 212first strand
Strand 2
A
201 204anti-parallel
Strand 3
A
192 197anti-parallel
Strand 4
A
184 189anti-parallel
Strand 5
A
232 238anti-parallel
Strand 6
A
244 246anti-parallel
Strand 7
A
256 257anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 212first strand
Strand 2
B
201 204anti-parallel
Strand 3
B
192 197anti-parallel
Strand 4
B
184 189anti-parallel
Strand 5
B
233 238anti-parallel
Strand 6
B
244 246anti-parallel
Strand 7
B
256 257anti-parallel
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