Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B8I entry

There is 1 chain in PDB entry 9B8I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 26	PHE 1733

There are 17 helices in PDB entry 9B8I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	26	42	Right-handed alpha
Helix 2	AA2	C	43	58	Right-handed alpha
Helix 3	AA3	C	61	71	Right-handed alpha
Helix 4	AA4	C	81	90	Right-handed alpha
Helix 5	AA5	C	1077	1081	Right-handed alpha
Helix 6	AA6	C	1145	1149	Right-handed 310
Helix 7	AA7	C	1160	1164	Right-handed 310
Helix 8	AA8	C	1240	1259	Right-handed alpha
Helix 9	AA9	C	1260	1262	Right-handed 310
Helix 10	AB1	C	1321	1334	Right-handed alpha
Helix 11	AB2	C	1372	1376	Right-handed alpha
Helix 12	AB3	C	1378	1381	Right-handed 310
Helix 13	AB4	C	1531	1539	Right-handed alpha
Helix 14	AB5	C	1560	1578	Right-handed alpha
Helix 15	AB6	C	1643	1648	Right-handed alpha
Helix 16	AB7	C	1684	1697	Right-handed alpha
Helix 17	AB8	C	1697	1702	Right-handed alpha

There are 11 sheets in PDB entry 9B8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1070	1076	first strand
Strand 2	C	1199	1206	anti-parallel
Strand 3	C	1106	1119	anti-parallel
Strand 4	C	1192	1194	anti-parallel
Strand 5	C	1087	1089	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1070	1076	first strand
Strand 2	C	1199	1206	anti-parallel
Strand 3	C	1106	1119	anti-parallel
Strand 4	C	1153	1159	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1095	1101	first strand
Strand 2	C	1167	1175	anti-parallel
Strand 3	C	1129	1134	anti-parallel
Strand 4	C	1138	1143	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1267	1269	first strand
Strand 2	C	1233	1235	parallel
Strand 3	C	1277	1282	parallel
Strand 4	C	1313	1319	parallel
Strand 5	C	1300	1305	anti-parallel
Strand 6	C	1344	1345	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1370	1371	first strand
Strand 2	C	1517	1519	anti-parallel
Strand 3	C	1410	1418	anti-parallel
Strand 4	C	1510	1512	anti-parallel
Strand 5	C	1383	1384	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1370	1371	first strand
Strand 2	C	1517	1519	anti-parallel
Strand 3	C	1410	1418	anti-parallel
Strand 4	C	1463	1471	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1392	1397	first strand
Strand 2	C	1479	1487	anti-parallel
Strand 3	C	1428	1433	anti-parallel
Strand 4	C	1437	1442	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1402	1403	first strand
Strand 2	C	1524	1529	anti-parallel
Strand 3	C	1725	1728	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1494	1495	first strand
Strand 2	C	1500	1501	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1586	1588	first strand
Strand 2	C	1551	1554	parallel
Strand 3	C	1600	1604	parallel
Strand 4	C	1676	1682	parallel
Strand 5	C	1662	1668	anti-parallel
Strand 6	C	1708	1711	anti-parallel
Strand 7	C	1716	1719	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1619	1622	first strand
Strand 2	C	1625	1631	anti-parallel
Strand 3	C	1649	1656	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B8I

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8I