Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9B8J entry

There are 7 chains in PDB entry 9B8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 250GLY 509
B
 GLN 532LEU 583
D
 ASP 1139ALA 1421
E
 GLU 1SER 122
F
 ALA 1LYS 107
H
 GLN 1SER 113
L
 GLU 1LYS 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9B8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
256 272Right-handed alpha
Helix 2
AA2
A
282 291Right-handed alpha
Helix 3
AA3
A
296 309Right-handed alpha
Helix 4
AA4
A
366 369Right-handed 310
Helix 5
AA5
A
394 398Right-handed 310
Helix 6
AA6
A
473 477Right-handed 310
Helix 7
AA7
D
1170 1175Right-handed 310
Helix 8
AA8
D
1377 1388Right-handed alpha
Helix 9
AA9
H
87 91Right-handed 310
Helix 10
AB1
L
79 83Right-handed 310
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There are 20 sheets in PDB entry 9B8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
F
93 94anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 355first strand
Strand 2
A
360 364anti-parallel
Strand 3
A
439 443anti-parallel
Strand 4
A
432 436anti-parallel
Strand 5
A
465 470anti-parallel
Strand 6
A
413 418anti-parallel
Strand 7
A
403 408anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
459 462anti-parallel
Strand 3
A
454 455anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
496 507parallel
Strand 3
A
480 493anti-parallel
Strand 4
A
425 428anti-parallel
Strand 5
A
447 448anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
496 507parallel
Strand 3
B
560 562anti-parallel
Strand 4
B
553 556anti-parallel
Strand 5
B
572 582anti-parallel
Strand 6
B
534 542anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1228 1231first strand
Strand 2
D
1142 1144anti-parallel
Strand 3
D
1414 1415anti-parallel
Strand 4
D
1397 1399anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1148 1153first strand
Strand 2
D
1219 1225anti-parallel
Strand 3
D
1277 1283anti-parallel
Strand 4
D
1297 1300anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1157 1164first strand
Strand 2
D
1203 1212anti-parallel
Strand 3
D
1181 1188anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1355 1360first strand
Strand 2
D
1366 1371anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1402 1403first strand
Strand 2
D
1410 1411anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
77 83anti-parallel
Strand 4
E
68 72anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
57 59first strand
Strand 2
E
45 51anti-parallel
Strand 3
E
33 39anti-parallel
Strand 4
E
91 100anti-parallel
Strand 5
E
106 110anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
57 59first strand
Strand 2
E
45 51anti-parallel
Strand 3
E
33 39anti-parallel
Strand 4
E
91 100anti-parallel
Strand 5
E
116 118anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 7first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
70 75anti-parallel
Strand 4
F
62 67anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 13first strand
Strand 2
F
102 106parallel
Strand 3
F
85 90anti-parallel
Strand 4
F
33 38anti-parallel
Strand 5
F
45 48anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
93 97anti-parallel
Strand 5
H
107 108anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 6first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
102 105parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 48anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
102 105parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
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