Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B8O entry

There are 19 chains in PDB entry 9B8O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 64	ALA 139
P	ILE 248	ASP 451
U	GLY 11	ALA 224
a	THR 363	PHE 826
b	THR 2	GLY 204
d	SER 2	PHE 351
e	THR 2	GLU 81
f	LEU 5	ASN 90
g	ASN 6	LYS 155
h	ASN 6	LYS 155
i	ASN 6	LYS 155
j	ASN 6	LYS 155
k	ASN 6	LYS 155
l	ASN 6	LYS 155
m	ASN 6	LYS 155
n	ASN 6	LYS 155
o	ASN 6	LYS 155
p	PRO 292	THR 343
L	GLY 26	ASN 35

There are127 helices in PDB entry 9B8O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	64	77	Right-handed alpha
Helix 2	AA2	H	79	86	Right-handed alpha
Helix 3	AA3	H	128	139	Right-handed alpha
Helix 4	AA4	P	279	284	Right-handed alpha
Helix 5	AA5	P	309	313	Right-handed 310
Helix 6	AA6	P	371	375	Right-handed 310
Helix 7	AA7	P	416	442	Right-handed alpha
Helix 8	AA8	U	12	18	Right-handed alpha
Helix 9	AA9	U	18	30	Right-handed alpha
Helix 10	AB1	U	32	40	Right-handed alpha
Helix 11	AB2	U	53	57	Right-handed 310
Helix 12	AB3	U	70	73	Right-handed 310
Helix 13	AB4	U	95	123	Right-handed alpha
Helix 14	AB5	U	123	129	Right-handed alpha
Helix 15	AB6	U	131	167	Right-handed alpha
Helix 16	AB7	U	167	175	Right-handed alpha
Helix 17	AB8	U	193	221	Right-handed alpha
Helix 18	AB9	a	371	380	Right-handed alpha
Helix 19	AC1	a	391	407	Right-handed alpha
Helix 20	AC2	a	409	426	Right-handed alpha
Helix 21	AC3	a	426	433	Right-handed alpha
Helix 22	AC4	a	437	446	Right-handed alpha
Helix 23	AC5	a	446	465	Right-handed alpha
Helix 24	AC6	a	481	487	Right-handed alpha
Helix 25	AC7	a	491	498	Right-handed alpha
Helix 26	AC8	a	521	526	Right-handed alpha
Helix 27	AC9	a	528	564	Right-handed alpha
Helix 28	AD1	a	565	571	Right-handed alpha
Helix 29	AD2	a	572	584	Right-handed alpha
Helix 30	AD3	a	584	598	Right-handed alpha
Helix 31	AD4	a	608	619	Right-handed alpha
Helix 32	AD5	a	632	653	Right-handed alpha
Helix 33	AD6	a	653	665	Right-handed alpha
Helix 34	AD7	a	713	739	Right-handed alpha
Helix 35	AD8	a	740	766	Right-handed alpha
Helix 36	AD9	a	771	790	Right-handed alpha
Helix 37	AE1	a	793	809	Right-handed alpha
Helix 38	AE2	b	3	29	Right-handed alpha
Helix 39	AE3	b	31	35	Right-handed 310
Helix 40	AE4	b	36	44	Right-handed alpha
Helix 41	AE5	b	45	80	Right-handed alpha
Helix 42	AE6	b	81	83	Right-handed 310
Helix 43	AE7	b	84	90	Right-handed alpha
Helix 44	AE8	b	90	113	Right-handed alpha
Helix 45	AE9	b	122	167	Right-handed alpha
Helix 46	AF1	b	169	171	Right-handed 310
Helix 47	AF2	b	172	198	Right-handed alpha
Helix 48	AF3	d	4	25	Right-handed alpha
Helix 49	AF4	d	29	38	Right-handed alpha
Helix 50	AF5	d	41	51	Right-handed alpha
Helix 51	AF6	d	66	88	Right-handed alpha
Helix 52	AF7	d	90	118	Right-handed alpha
Helix 53	AF8	d	121	129	Right-handed 310
Helix 54	AF9	d	130	134	Right-handed 310
Helix 55	AG1	d	146	157	Right-handed alpha
Helix 56	AG2	d	158	166	Right-handed 310
Helix 57	AG3	d	170	176	Right-handed alpha
Helix 58	AG4	d	177	201	Right-handed alpha
Helix 59	AG5	d	202	227	Right-handed alpha
Helix 60	AG6	d	233	239	Right-handed alpha
Helix 61	AG7	d	250	258	Right-handed alpha
Helix 62	AG8	d	260	270	Right-handed alpha
Helix 63	AG9	d	271	281	Right-handed alpha
Helix 64	AH1	d	289	305	Right-handed alpha
Helix 65	AH2	d	312	338	Right-handed alpha
Helix 66	AH3	d	343	347	Right-handed 310
Helix 67	AH4	e	7	22	Right-handed alpha
Helix 68	AH5	e	22	28	Right-handed alpha
Helix 69	AH6	e	33	60	Right-handed alpha
Helix 70	AH7	e	69	80	Right-handed alpha
Helix 71	AH8	f	8	35	Right-handed alpha
Helix 72	AH9	f	37	44	Right-handed 310
Helix 73	AI1	f	47	52	Right-handed 310
Helix 74	AI2	f	55	90	Right-handed alpha
Helix 75	AI3	g	11	45	Right-handed alpha
Helix 76	AI4	g	48	52	Right-handed 310
Helix 77	AI5	g	53	55	Right-handed 310
Helix 78	AI6	g	56	78	Right-handed alpha
Helix 79	AI7	g	85	124	Right-handed alpha
Helix 80	AI8	g	126	153	Right-handed alpha
Helix 81	AI9	h	11	45	Right-handed alpha
Helix 82	AJ1	h	48	52	Right-handed 310
Helix 83	AJ2	h	56	78	Right-handed alpha
Helix 84	AJ3	h	85	122	Right-handed alpha
Helix 85	AJ4	h	126	154	Right-handed alpha
Helix 86	AJ5	i	8	10	Right-handed 310
Helix 87	AJ6	i	11	46	Right-handed alpha
Helix 88	AJ7	i	48	55	Right-handed 310
Helix 89	AJ8	i	56	80	Right-handed alpha
Helix 90	AJ9	i	85	124	Right-handed alpha
Helix 91	AK1	i	126	154	Right-handed alpha
Helix 92	AK2	j	10	46	Right-handed alpha
Helix 93	AK3	j	48	55	Right-handed 310
Helix 94	AK4	j	56	80	Right-handed alpha
Helix 95	AK5	j	85	122	Right-handed alpha
Helix 96	AK6	j	126	155	Right-handed alpha
Helix 97	AK7	k	11	46	Right-handed alpha
Helix 98	AK8	k	48	52	Right-handed 310
Helix 99	AK9	k	53	55	Right-handed 310
Helix 100	AL1	k	56	80	Right-handed alpha
Helix 101	AL2	k	85	124	Right-handed alpha
Helix 102	AL3	k	126	153	Right-handed alpha
Helix 103	AL4	l	11	46	Right-handed alpha
Helix 104	AL5	l	48	52	Right-handed 310
Helix 105	AL6	l	53	55	Right-handed 310
Helix 106	AL7	l	56	79	Right-handed alpha
Helix 107	AL8	l	85	122	Right-handed alpha
Helix 108	AL9	l	126	155	Right-handed alpha
Helix 109	AM1	m	10	46	Right-handed alpha
Helix 110	AM2	m	47	52	Right-handed 310
Helix 111	AM3	m	53	55	Right-handed 310
Helix 112	AM4	m	56	80	Right-handed alpha
Helix 113	AM5	m	85	122	Right-handed alpha
Helix 114	AM6	m	126	154	Right-handed alpha
Helix 115	AM7	n	11	46	Right-handed alpha
Helix 116	AM8	n	48	52	Right-handed 310
Helix 117	AM9	n	53	55	Right-handed 310
Helix 118	AN1	n	56	80	Right-handed alpha
Helix 119	AN2	n	85	122	Right-handed alpha
Helix 120	AN3	n	126	154	Right-handed alpha
Helix 121	AN4	o	11	46	Right-handed alpha
Helix 122	AN5	o	48	50	Right-handed 310
Helix 123	AN6	o	51	79	Right-handed alpha
Helix 124	AN7	o	85	124	Right-handed alpha
Helix 125	AN8	o	126	155	Right-handed alpha
Helix 126	AN9	p	302	330	Right-handed alpha
Helix 127	AO1	p	335	343	Right-handed alpha

There are 6 sheets in PDB entry 9B8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	252	255	first strand
Strand 2	P	259	272	anti-parallel
Strand 3	P	386	396	anti-parallel
Strand 4	P	368	369	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	275	278	first strand
Strand 2	P	259	272	anti-parallel
Strand 3	P	386	396	anti-parallel
Strand 4	P	362	365	anti-parallel
Strand 5	P	408	410	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	295	296	first strand
Strand 2	P	301	307	anti-parallel
Strand 3	P	315	325	anti-parallel
Strand 4	P	332	343	anti-parallel
Strand 5	P	356	358	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	295	296	first strand
Strand 2	P	301	307	anti-parallel
Strand 3	P	315	325	anti-parallel
Strand 4	P	332	343	anti-parallel
Strand 5	P	346	352	anti-parallel
Strand 6	P	378	379	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	58	66	first strand
Strand 2	U	42	50	anti-parallel
Strand 3	U	184	187	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	75	79	first strand
Strand 2	U	86	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B8O

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8O