Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B8Q entry

There are 9 chains in PDB entry 9B8Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	THR 2	CYS 376
I	ALA 2	ARG 222
J	SER 4	ARG 222
K	LEU 3	ASN 221
M	SER 3	CYS 104
N	SER 3	PRO 108
O	GLN 4	VAL 106
T	ILE 18	ASN 463
a	GLU 9	PRO 362

There are 60 helices in PDB entry 9B8Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	14	30	Right-handed alpha
Helix 2	AA2	G	47	80	Right-handed alpha
Helix 3	AA3	G	81	84	Right-handed 310
Helix 4	AA4	G	97	104	Right-handed alpha
Helix 5	AA5	G	117	158	Right-handed alpha
Helix 6	AA6	G	166	170	Right-handed 310
Helix 7	AA7	G	196	203	Right-handed alpha
Helix 8	AA8	G	233	244	Right-handed alpha
Helix 9	AA9	G	254	310	Right-handed alpha
Helix 10	AB1	G	327	339	Right-handed alpha
Helix 11	AB2	I	4	108	Right-handed alpha
Helix 12	AB3	I	108	119	Right-handed alpha
Helix 13	AB4	I	195	216	Right-handed alpha
Helix 14	AB5	J	5	106	Right-handed alpha
Helix 15	AB6	J	108	122	Right-handed alpha
Helix 16	AB7	J	195	217	Right-handed alpha
Helix 17	AB8	K	4	105	Right-handed alpha
Helix 18	AB9	K	195	217	Right-handed alpha
Helix 19	AC1	M	4	62	Right-handed alpha
Helix 20	AC2	M	64	104	Right-handed alpha
Helix 21	AC3	N	5	105	Right-handed alpha
Helix 22	AC4	O	5	105	Right-handed alpha
Helix 23	AC5	T	19	29	Right-handed alpha
Helix 24	AC6	T	33	39	Right-handed alpha
Helix 25	AC7	T	43	56	Right-handed alpha
Helix 26	AC8	T	58	69	Right-handed alpha
Helix 27	AC9	T	69	84	Right-handed alpha
Helix 28	AD1	T	86	104	Right-handed alpha
Helix 29	AD2	T	107	119	Right-handed alpha
Helix 30	AD3	T	127	132	Right-handed 310
Helix 31	AD4	T	134	152	Right-handed alpha
Helix 32	AD5	T	158	174	Right-handed alpha
Helix 33	AD6	T	193	210	Right-handed alpha
Helix 34	AD7	T	211	221	Right-handed alpha
Helix 35	AD8	T	222	233	Right-handed alpha
Helix 36	AD9	T	236	251	Right-handed alpha
Helix 37	AE1	T	253	260	Right-handed alpha
Helix 38	AE2	T	261	263	Right-handed 310
Helix 39	AE3	T	264	276	Right-handed alpha
Helix 40	AE4	T	278	295	Right-handed alpha
Helix 41	AE5	T	298	312	Right-handed alpha
Helix 42	AE6	T	313	324	Right-handed alpha
Helix 43	AE7	T	328	350	Right-handed alpha
Helix 44	AE8	T	351	362	Right-handed alpha
Helix 45	AE9	T	367	371	Right-handed 310
Helix 46	AF1	T	372	380	Right-handed alpha
Helix 47	AF2	T	381	383	Right-handed 310
Helix 48	AF3	T	384	401	Right-handed alpha
Helix 49	AF4	T	403	421	Right-handed alpha
Helix 50	AF5	T	423	432	Right-handed alpha
Helix 51	AF6	T	432	442	Right-handed alpha
Helix 52	AF7	T	445	460	Right-handed alpha
Helix 53	AF8	a	19	33	Right-handed alpha
Helix 54	AF9	a	45	50	Right-handed 310
Helix 55	AG1	a	51	75	Right-handed alpha
Helix 56	AG2	a	92	139	Right-handed alpha
Helix 57	AG3	a	179	191	Right-handed alpha
Helix 58	AG4	a	226	240	Right-handed alpha
Helix 59	AG5	a	250	309	Right-handed alpha
Helix 60	AG6	a	329	345	Right-handed alpha

There are 4 sheets in PDB entry 9B8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	37	first strand
Strand 2	G	319	323	anti-parallel
Strand 3	G	4	7	anti-parallel
Strand 4	G	371	374	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	182	185	first strand
Strand 2	G	223	230	anti-parallel
Strand 3	G	214	218	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	36	37	first strand
Strand 2	a	318	326	anti-parallel
Strand 3	a	10	18	anti-parallel
Strand 4	a	351	353	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	169	176	first strand
Strand 2	a	214	224	anti-parallel
Strand 3	a	195	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B8Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8Q