Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B8R entry

There are 3 chains in PDB entry 9B8R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	C 1	C 10
T	T 3	G 14
E	SER 27	THR 1186

There are 43 helices in PDB entry 9B8R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	27	50	Right-handed alpha
Helix 2	AA2	E	65	69	Right-handed 310
Helix 3	AA3	E	145	147	Right-handed 310
Helix 4	AA4	E	148	160	Right-handed alpha
Helix 5	AA5	E	179	183	Right-handed 310
Helix 6	AA6	E	195	216	Right-handed alpha
Helix 7	AA7	E	234	237	Right-handed 310
Helix 8	AA8	E	248	257	Right-handed alpha
Helix 9	AA9	E	354	370	Right-handed alpha
Helix 10	AB1	E	382	394	Right-handed alpha
Helix 11	AB2	E	397	403	Right-handed alpha
Helix 12	AB3	E	422	429	Right-handed alpha
Helix 13	AB4	E	433	437	Right-handed 310
Helix 14	AB5	E	438	447	Right-handed alpha
Helix 15	AB6	E	455	466	Right-handed alpha
Helix 16	AB7	E	466	488	Right-handed alpha
Helix 17	AB8	E	488	498	Right-handed alpha
Helix 18	AB9	E	503	510	Right-handed alpha
Helix 19	AC1	E	511	527	Right-handed alpha
Helix 20	AC2	E	577	598	Right-handed alpha
Helix 21	AC3	E	603	607	Right-handed 310
Helix 22	AC4	E	609	627	Right-handed alpha
Helix 23	AC5	E	643	653	Right-handed alpha
Helix 24	AC6	E	661	668	Right-handed alpha
Helix 25	AC7	E	693	706	Right-handed alpha
Helix 26	AC8	E	727	747	Right-handed alpha
Helix 27	AC9	E	769	798	Right-handed alpha
Helix 28	AD1	E	806	834	Right-handed alpha
Helix 29	AD2	E	843	869	Right-handed alpha
Helix 30	AD3	E	905	919	Right-handed alpha
Helix 31	AD4	E	993	1003	Right-handed alpha
Helix 32	AD5	E	1004	1008	Right-handed 310
Helix 33	AD6	E	1011	1032	Right-handed alpha
Helix 34	AD7	E	1038	1047	Right-handed alpha
Helix 35	AD8	E	1055	1060	Right-handed 310
Helix 36	AD9	E	1064	1078	Right-handed alpha
Helix 37	AE1	E	1079	1083	Right-handed 310
Helix 38	AE2	E	1110	1114	Right-handed 310
Helix 39	AE3	E	1115	1128	Right-handed alpha
Helix 40	AE4	E	1136	1141	Right-handed alpha
Helix 41	AE5	E	1142	1158	Right-handed alpha
Helix 42	AE6	E	1158	1165	Right-handed alpha
Helix 43	AE7	E	1177	1184	Right-handed alpha

There are 13 sheets in PDB entry 9B8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	78	first strand
Strand 2	E	264	268	anti-parallel
Strand 3	E	271	275	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	87	first strand
Strand 2	E	114	121	anti-parallel
Strand 3	E	129	134	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	172	first strand
Strand 2	E	186	192	anti-parallel
Strand 3	E	138	143	anti-parallel
Strand 4	E	239	243	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	335	336	first strand
Strand 2	E	346	352	anti-parallel
Strand 3	E	318	324	parallel
Strand 4	E	308	315	anti-parallel
Strand 5	E	286	293	anti-parallel
Strand 6	E	373	376	parallel
Strand 7	E	418	421	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	405	406	first strand
Strand 2	E	412	413	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	542	543	first strand
Strand 2	E	546	553	anti-parallel
Strand 3	E	678	689	anti-parallel
Strand 4	E	752	763	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	558	560	first strand
Strand 2	E	870	875	anti-parallel
Strand 3	E	878	884	anti-parallel
Strand 4	E	634	641	anti-parallel
Strand 5	E	944	950	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	564	567	first strand
Strand 2	E	952	955	anti-parallel
Strand 3	E	969	972	anti-parallel
Strand 4	E	978	982	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	572	575	first strand
Strand 2	E	629	632	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	708	710	first strand
Strand 2	E	720	722	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	890	894	first strand
Strand 2	E	900	904	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	920	928	first strand
Strand 2	E	933	939	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	991	992	first strand
Strand 2	E	1048	1051	anti-parallel
Strand 3	E	1088	1093	anti-parallel
Strand 4	E	1106	1108	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B8R

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8R