Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B8T entry

There are 6 chains in PDB entry 9B8T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 24	ALA 1198
B	MET 1	SER 261
C	MET 1	SER 261
D	MET 1	SER 261
P	A 13	C 35
T	C 21	T 47

There are 54 helices in PDB entry 9B8T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	48	Right-handed alpha
Helix 2	AA2	A	113	122	Right-handed alpha
Helix 3	AA3	A	159	180	Right-handed alpha
Helix 4	AA4	A	227	236	Right-handed alpha
Helix 5	AA5	A	339	355	Right-handed alpha
Helix 6	AA6	A	367	380	Right-handed alpha
Helix 7	AA7	A	382	388	Right-handed alpha
Helix 8	AA8	A	407	415	Right-handed alpha
Helix 9	AA9	A	418	422	Right-handed 310
Helix 10	AB1	A	423	431	Right-handed alpha
Helix 11	AB2	A	451	474	Right-handed alpha
Helix 12	AB3	A	474	483	Right-handed alpha
Helix 13	AB4	A	488	495	Right-handed alpha
Helix 14	AB5	A	496	512	Right-handed alpha
Helix 15	AB6	A	563	584	Right-handed alpha
Helix 16	AB7	A	599	610	Right-handed alpha
Helix 17	AB8	A	629	639	Right-handed alpha
Helix 18	AB9	A	647	654	Right-handed alpha
Helix 19	AC1	A	679	693	Right-handed alpha
Helix 20	AC2	A	711	731	Right-handed alpha
Helix 21	AC3	A	752	783	Right-handed alpha
Helix 22	AC4	A	790	818	Right-handed alpha
Helix 23	AC5	A	819	821	Right-handed 310
Helix 24	AC6	A	828	851	Right-handed alpha
Helix 25	AC7	A	891	905	Right-handed alpha
Helix 26	AC8	A	980	989	Right-handed alpha
Helix 27	AC9	A	990	995	Right-handed 310
Helix 28	AD1	A	998	1019	Right-handed alpha
Helix 29	AD2	A	1025	1031	Right-handed alpha
Helix 30	AD3	A	1043	1047	Right-handed 310
Helix 31	AD4	A	1051	1065	Right-handed alpha
Helix 32	AD5	A	1066	1069	Right-handed 310
Helix 33	AD6	A	1089	1091	Right-handed 310
Helix 34	AD7	A	1097	1099	Right-handed 310
Helix 35	AD8	A	1106	1114	Right-handed alpha
Helix 36	AD9	A	1123	1128	Right-handed alpha
Helix 37	AE1	A	1129	1145	Right-handed alpha
Helix 38	AE2	A	1145	1152	Right-handed alpha
Helix 39	AE3	A	1164	1176	Right-handed alpha
Helix 40	AE4	A	1182	1187	Right-handed alpha
Helix 41	AE5	B	9	21	Right-handed alpha
Helix 42	AE6	B	72	80	Right-handed alpha
Helix 43	AE7	B	140	152	Right-handed alpha
Helix 44	AE8	B	209	216	Right-handed alpha
Helix 45	AE9	B	217	222	Right-handed 310
Helix 46	AF1	C	9	18	Right-handed alpha
Helix 47	AF2	C	72	80	Right-handed alpha
Helix 48	AF3	C	141	152	Right-handed alpha
Helix 49	AF4	C	208	216	Right-handed alpha
Helix 50	AF5	C	217	219	Right-handed 310
Helix 51	AF6	D	9	21	Right-handed alpha
Helix 52	AF7	D	74	79	Right-handed alpha
Helix 53	AF8	D	141	152	Right-handed alpha
Helix 54	AF9	D	209	216	Right-handed alpha

There are 20 sheets in PDB entry 9B8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	93	99	parallel
Strand 3	A	78	87	anti-parallel
Strand 4	A	68	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	93	99	parallel
Strand 3	A	78	87	anti-parallel
Strand 4	A	57	65	anti-parallel
Strand 5	A	243	248	anti-parallel
Strand 6	A	256	260	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	136	first strand
Strand 2	A	150	157	anti-parallel
Strand 3	A	103	108	anti-parallel
Strand 4	A	218	222	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	358	361	parallel
Strand 3	A	404	406	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	278	first strand
Strand 2	A	293	299	anti-parallel
Strand 3	A	304	308	anti-parallel
Strand 4	A	333	335	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	539	first strand
Strand 2	A	668	675	anti-parallel
Strand 3	A	736	743	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	546	first strand
Strand 2	A	855	859	anti-parallel
Strand 3	A	863	869	anti-parallel
Strand 4	A	620	627	anti-parallel
Strand 5	A	931	937	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	553	first strand
Strand 2	A	939	942	anti-parallel
Strand 3	A	956	959	anti-parallel
Strand 4	A	965	969	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	561	first strand
Strand 2	A	615	618	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	646	first strand
Strand 2	A	745	747	anti-parallel
Strand 3	A	664	665	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	876	879	first strand
Strand 2	A	887	890	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	911	913	first strand
Strand 2	A	921	923	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	978	979	first strand
Strand 2	A	1035	1038	anti-parallel
Strand 3	A	1075	1080	anti-parallel
Strand 4	A	1093	1095	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1189	1192	first strand
Strand 2	D	124	126	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	98	104	anti-parallel
Strand 5	B	110	117	anti-parallel
Strand 6	C	176	183	anti-parallel
Strand 7	C	166	172	anti-parallel
Strand 8	C	158	162	anti-parallel
Strand 9	C	204	207	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	25	29	anti-parallel
Strand 3	B	35	40	anti-parallel
Strand 4	B	46	52	anti-parallel
Strand 5	B	246	251	anti-parallel
Strand 6	B	235	240	anti-parallel
Strand 7	B	225	229	anti-parallel
Strand 8	B	135	139	anti-parallel
Strand 9	B	196	199	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	208	first strand
Strand 2	B	157	163	anti-parallel
Strand 3	B	166	172	anti-parallel
Strand 4	B	176	182	anti-parallel
Strand 5	D	111	117	anti-parallel
Strand 6	D	98	104	anti-parallel
Strand 7	D	87	92	anti-parallel
Strand 8	D	2	6	anti-parallel
Strand 9	D	59	61	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	98	104	anti-parallel
Strand 5	C	110	117	anti-parallel
Strand 6	D	176	182	anti-parallel
Strand 7	D	167	173	anti-parallel
Strand 8	D	157	162	anti-parallel
Strand 9	D	203	208	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	25	30	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	47	53	anti-parallel
Strand 5	C	245	251	anti-parallel
Strand 6	C	235	241	anti-parallel
Strand 7	C	224	229	anti-parallel
Strand 8	C	135	140	anti-parallel
Strand 9	C	196	199	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	28	30	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	46	53	anti-parallel
Strand 5	D	245	251	anti-parallel
Strand 6	D	233	241	anti-parallel
Strand 7	D	224	230	anti-parallel
Strand 8	D	135	140	anti-parallel
Strand 9	D	196	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B8T

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8T