Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B8W entry

There are 4 chains in PDB entry 9B8W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 7	ARG 1177
B	GLU 7	ARG 1177
C	GLU 7	ARG 1177
D	GLU 7	ARG 1177

There are200 helices in PDB entry 9B8W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	15	Right-handed alpha
Helix 2	AA2	A	98	108	Right-handed alpha
Helix 3	AA3	A	131	150	Right-handed alpha
Helix 4	AA4	A	160	176	Right-handed alpha
Helix 5	AA5	A	196	201	Right-handed 310
Helix 6	AA6	A	246	259	Right-handed alpha
Helix 7	AA7	A	264	268	Right-handed 310
Helix 8	AA8	A	281	294	Right-handed alpha
Helix 9	AA9	A	308	318	Right-handed alpha
Helix 10	AB1	A	325	336	Right-handed alpha
Helix 11	AB2	A	345	356	Right-handed alpha
Helix 12	AB3	A	373	386	Right-handed alpha
Helix 13	AB4	A	390	392	Right-handed 310
Helix 14	AB5	A	393	403	Right-handed alpha
Helix 15	AB6	A	406	413	Right-handed alpha
Helix 16	AB7	A	421	435	Right-handed alpha
Helix 17	AB8	A	437	447	Right-handed alpha
Helix 18	AB9	A	450	455	Right-handed alpha
Helix 19	AC1	A	456	466	Right-handed alpha
Helix 20	AC2	A	471	480	Right-handed alpha
Helix 21	AC3	A	502	512	Right-handed alpha
Helix 22	AC4	A	558	570	Right-handed alpha
Helix 23	AC5	A	571	581	Right-handed alpha
Helix 24	AC6	A	584	602	Right-handed alpha
Helix 25	AC7	A	607	634	Right-handed alpha
Helix 26	AC8	A	634	644	Right-handed alpha
Helix 27	AC9	A	653	662	Right-handed alpha
Helix 28	AD1	A	663	669	Right-handed alpha
Helix 29	AD2	A	669	682	Right-handed alpha
Helix 30	AD3	A	689	699	Right-handed alpha
Helix 31	AD4	A	700	705	Right-handed 310
Helix 32	AD5	A	767	778	Right-handed alpha
Helix 33	AD6	A	778	803	Right-handed alpha
Helix 34	AD7	A	811	834	Right-handed alpha
Helix 35	AD8	A	852	861	Right-handed alpha
Helix 36	AD9	A	862	884	Right-handed alpha
Helix 37	AE1	A	887	906	Right-handed alpha
Helix 38	AE2	A	907	912	Right-handed 310
Helix 39	AE3	A	916	926	Right-handed alpha
Helix 40	AE4	A	926	953	Right-handed alpha
Helix 41	AE5	A	958	967	Right-handed alpha
Helix 42	AE6	A	967	975	Right-handed alpha
Helix 43	AE7	A	979	984	Right-handed alpha
Helix 44	AE8	A	985	988	Right-handed 310
Helix 45	AE9	A	1016	1033	Right-handed alpha
Helix 46	AF1	A	1033	1050	Right-handed alpha
Helix 47	AF2	A	1050	1071	Right-handed alpha
Helix 48	AF3	A	1079	1088	Right-handed alpha
Helix 49	AF4	A	1116	1142	Right-handed alpha
Helix 50	AF5	A	1143	1177	Right-handed alpha
Helix 51	AF6	B	10	15	Right-handed alpha
Helix 52	AF7	B	98	108	Right-handed alpha
Helix 53	AF8	B	131	150	Right-handed alpha
Helix 54	AF9	B	160	176	Right-handed alpha
Helix 55	AG1	B	196	201	Right-handed 310
Helix 56	AG2	B	246	259	Right-handed alpha
Helix 57	AG3	B	264	268	Right-handed 310
Helix 58	AG4	B	281	294	Right-handed alpha
Helix 59	AG5	B	308	318	Right-handed alpha
Helix 60	AG6	B	325	336	Right-handed alpha
Helix 61	AG7	B	345	356	Right-handed alpha
Helix 62	AG8	B	373	386	Right-handed alpha
Helix 63	AG9	B	390	392	Right-handed 310
Helix 64	AH1	B	393	403	Right-handed alpha
Helix 65	AH2	B	406	413	Right-handed alpha
Helix 66	AH3	B	421	435	Right-handed alpha
Helix 67	AH4	B	437	447	Right-handed alpha
Helix 68	AH5	B	450	455	Right-handed alpha
Helix 69	AH6	B	456	466	Right-handed alpha
Helix 70	AH7	B	471	480	Right-handed alpha
Helix 71	AH8	B	502	512	Right-handed alpha
Helix 72	AH9	B	558	570	Right-handed alpha
Helix 73	AI1	B	571	581	Right-handed alpha
Helix 74	AI2	B	584	602	Right-handed alpha
Helix 75	AI3	B	607	634	Right-handed alpha
Helix 76	AI4	B	634	644	Right-handed alpha
Helix 77	AI5	B	653	662	Right-handed alpha
Helix 78	AI6	B	663	669	Right-handed alpha
Helix 79	AI7	B	669	682	Right-handed alpha
Helix 80	AI8	B	689	699	Right-handed alpha
Helix 81	AI9	B	700	705	Right-handed 310
Helix 82	AJ1	B	767	778	Right-handed alpha
Helix 83	AJ2	B	778	803	Right-handed alpha
Helix 84	AJ3	B	811	834	Right-handed alpha
Helix 85	AJ4	B	852	861	Right-handed alpha
Helix 86	AJ5	B	862	884	Right-handed alpha
Helix 87	AJ6	B	887	906	Right-handed alpha
Helix 88	AJ7	B	907	912	Right-handed 310
Helix 89	AJ8	B	916	926	Right-handed alpha
Helix 90	AJ9	B	926	953	Right-handed alpha
Helix 91	AK1	B	958	967	Right-handed alpha
Helix 92	AK2	B	967	975	Right-handed alpha
Helix 93	AK3	B	979	984	Right-handed alpha
Helix 94	AK4	B	985	988	Right-handed 310
Helix 95	AK5	B	1016	1033	Right-handed alpha
Helix 96	AK6	B	1033	1050	Right-handed alpha
Helix 97	AK7	B	1050	1071	Right-handed alpha
Helix 98	AK8	B	1079	1088	Right-handed alpha
Helix 99	AK9	B	1116	1142	Right-handed alpha
Helix 100	AL1	B	1143	1177	Right-handed alpha
Helix 101	AL2	C	10	15	Right-handed alpha
Helix 102	AL3	C	98	108	Right-handed alpha
Helix 103	AL4	C	131	150	Right-handed alpha
Helix 104	AL5	C	160	176	Right-handed alpha
Helix 105	AL6	C	196	201	Right-handed 310
Helix 106	AL7	C	246	259	Right-handed alpha
Helix 107	AL8	C	264	268	Right-handed 310
Helix 108	AL9	C	281	294	Right-handed alpha
Helix 109	AM1	C	308	318	Right-handed alpha
Helix 110	AM2	C	325	336	Right-handed alpha
Helix 111	AM3	C	345	356	Right-handed alpha
Helix 112	AM4	C	373	386	Right-handed alpha
Helix 113	AM5	C	390	392	Right-handed 310
Helix 114	AM6	C	393	403	Right-handed alpha
Helix 115	AM7	C	406	413	Right-handed alpha
Helix 116	AM8	C	421	435	Right-handed alpha
Helix 117	AM9	C	437	447	Right-handed alpha
Helix 118	AN1	C	450	455	Right-handed alpha
Helix 119	AN2	C	456	466	Right-handed alpha
Helix 120	AN3	C	471	480	Right-handed alpha
Helix 121	AN4	C	502	512	Right-handed alpha
Helix 122	AN5	C	558	570	Right-handed alpha
Helix 123	AN6	C	571	581	Right-handed alpha
Helix 124	AN7	C	584	602	Right-handed alpha
Helix 125	AN8	C	607	634	Right-handed alpha
Helix 126	AN9	C	634	644	Right-handed alpha
Helix 127	AO1	C	653	662	Right-handed alpha
Helix 128	AO2	C	663	669	Right-handed alpha
Helix 129	AO3	C	669	682	Right-handed alpha
Helix 130	AO4	C	689	699	Right-handed alpha
Helix 131	AO5	C	700	705	Right-handed 310
Helix 132	AO6	C	767	778	Right-handed alpha
Helix 133	AO7	C	778	803	Right-handed alpha
Helix 134	AO8	C	811	834	Right-handed alpha
Helix 135	AO9	C	852	861	Right-handed alpha
Helix 136	AP1	C	862	884	Right-handed alpha
Helix 137	AP2	C	887	906	Right-handed alpha
Helix 138	AP3	C	907	912	Right-handed 310
Helix 139	AP4	C	916	926	Right-handed alpha
Helix 140	AP5	C	926	953	Right-handed alpha
Helix 141	AP6	C	958	967	Right-handed alpha
Helix 142	AP7	C	967	975	Right-handed alpha
Helix 143	AP8	C	979	984	Right-handed alpha
Helix 144	AP9	C	985	988	Right-handed 310
Helix 145	AQ1	C	1016	1033	Right-handed alpha
Helix 146	AQ2	C	1033	1050	Right-handed alpha
Helix 147	AQ3	C	1050	1071	Right-handed alpha
Helix 148	AQ4	C	1079	1088	Right-handed alpha
Helix 149	AQ5	C	1116	1142	Right-handed alpha
Helix 150	AQ6	C	1143	1177	Right-handed alpha
Helix 151	AQ7	D	10	15	Right-handed alpha
Helix 152	AQ8	D	98	108	Right-handed alpha
Helix 153	AQ9	D	131	150	Right-handed alpha
Helix 154	AR1	D	160	176	Right-handed alpha
Helix 155	AR2	D	196	201	Right-handed 310
Helix 156	AR3	D	246	259	Right-handed alpha
Helix 157	AR4	D	264	268	Right-handed 310
Helix 158	AR5	D	281	294	Right-handed alpha
Helix 159	AR6	D	308	318	Right-handed alpha
Helix 160	AR7	D	325	336	Right-handed alpha
Helix 161	AR8	D	345	356	Right-handed alpha
Helix 162	AR9	D	373	386	Right-handed alpha
Helix 163	AS1	D	390	392	Right-handed 310
Helix 164	AS2	D	393	403	Right-handed alpha
Helix 165	AS3	D	406	413	Right-handed alpha
Helix 166	AS4	D	421	435	Right-handed alpha
Helix 167	AS5	D	437	447	Right-handed alpha
Helix 168	AS6	D	450	455	Right-handed alpha
Helix 169	AS7	D	456	466	Right-handed alpha
Helix 170	AS8	D	471	480	Right-handed alpha
Helix 171	AS9	D	502	512	Right-handed alpha
Helix 172	AT1	D	558	570	Right-handed alpha
Helix 173	AT2	D	571	581	Right-handed alpha
Helix 174	AT3	D	584	602	Right-handed alpha
Helix 175	AT4	D	607	634	Right-handed alpha
Helix 176	AT5	D	634	644	Right-handed alpha
Helix 177	AT6	D	653	662	Right-handed alpha
Helix 178	AT7	D	663	669	Right-handed alpha
Helix 179	AT8	D	669	682	Right-handed alpha
Helix 180	AT9	D	689	699	Right-handed alpha
Helix 181	AU1	D	700	705	Right-handed 310
Helix 182	AU2	D	767	778	Right-handed alpha
Helix 183	AU3	D	778	803	Right-handed alpha
Helix 184	AU4	D	811	834	Right-handed alpha
Helix 185	AU5	D	852	861	Right-handed alpha
Helix 186	AU6	D	862	884	Right-handed alpha
Helix 187	AU7	D	887	906	Right-handed alpha
Helix 188	AU8	D	907	912	Right-handed 310
Helix 189	AU9	D	916	926	Right-handed alpha
Helix 190	AV1	D	926	953	Right-handed alpha
Helix 191	AV2	D	958	967	Right-handed alpha
Helix 192	AV3	D	967	975	Right-handed alpha
Helix 193	AV4	D	979	984	Right-handed alpha
Helix 194	AV5	D	985	988	Right-handed 310
Helix 195	AV6	D	1016	1033	Right-handed alpha
Helix 196	AV7	D	1033	1050	Right-handed alpha
Helix 197	AV8	D	1050	1071	Right-handed alpha
Helix 198	AV9	D	1079	1088	Right-handed alpha
Helix 199	AW1	D	1116	1142	Right-handed alpha
Helix 200	AW2	D	1143	1177	Right-handed alpha

There are 16 sheets in PDB entry 9B8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	68	71	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	89	94	anti-parallel
Strand 3	A	231	236	parallel
Strand 4	A	184	190	parallel
Strand 5	A	152	156	parallel
Strand 6	A	118	122	parallel
Strand 7	A	273	277	parallel
Strand 8	A	298	301	parallel
Strand 9	A	362	364	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	210	211	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	989	990	first strand
Strand 2	A	1000	1002	anti-parallel
Strand 3	A	1012	1013	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	68	71	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	89	94	anti-parallel
Strand 3	B	231	236	parallel
Strand 4	B	184	190	parallel
Strand 5	B	152	156	parallel
Strand 6	B	118	122	parallel
Strand 7	B	273	277	parallel
Strand 8	B	298	301	parallel
Strand 9	B	362	364	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	210	211	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	989	990	first strand
Strand 2	B	1000	1002	anti-parallel
Strand 3	B	1012	1013	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	19	first strand
Strand 2	C	68	71	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	89	94	anti-parallel
Strand 3	C	231	236	parallel
Strand 4	C	184	190	parallel
Strand 5	C	152	156	parallel
Strand 6	C	118	122	parallel
Strand 7	C	273	277	parallel
Strand 8	C	298	301	parallel
Strand 9	C	362	364	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	80	first strand
Strand 2	C	210	211	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	989	990	first strand
Strand 2	C	1000	1002	anti-parallel
Strand 3	C	1012	1013	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	19	first strand
Strand 2	D	68	71	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	77	first strand
Strand 2	D	89	94	anti-parallel
Strand 3	D	231	236	parallel
Strand 4	D	184	190	parallel
Strand 5	D	152	156	parallel
Strand 6	D	118	122	parallel
Strand 7	D	273	277	parallel
Strand 8	D	298	301	parallel
Strand 9	D	362	364	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	80	first strand
Strand 2	D	210	211	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	989	990	first strand
Strand 2	D	1000	1002	anti-parallel
Strand 3	D	1012	1013	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B8W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B8W