Analysis of interatomic Contacts of Structural Units in PDB entry:
9B9E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B9E entry

There are 6 chains in PDB entry 9B9E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 27	ASP 482
B	ILE 27	ASP 482
C	ILE 27	ASP 482
D	VAL 1	SER 124
E	VAL 1	SER 124
F	VAL 1	SER 124

There are 63 helices in PDB entry 9B9E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	34	Right-handed alpha
Helix 2	AA2	A	65	72	Right-handed 310
Helix 3	AA3	A	74	100	Right-handed alpha
Helix 4	AA4	A	117	121	Right-handed alpha
Helix 5	AA5	A	125	145	Right-handed alpha
Helix 6	AA6	A	147	153	Right-handed alpha
Helix 7	AA7	A	175	182	Right-handed alpha
Helix 8	AA8	A	182	187	Right-handed alpha
Helix 9	AA9	A	191	215	Right-handed alpha
Helix 10	AB1	A	227	232	Right-handed alpha
Helix 11	AB2	A	233	236	Right-handed 310
Helix 12	AB3	A	238	245	Right-handed alpha
Helix 13	AB4	A	252	259	Right-handed alpha
Helix 14	AB5	A	328	331	Right-handed 310
Helix 15	AB6	A	349	357	Right-handed alpha
Helix 16	AB7	A	359	363	Right-handed 310
Helix 17	AB8	A	437	441	Right-handed 310
Helix 18	AB9	A	452	481	Right-handed alpha
Helix 19	AC1	B	29	35	Right-handed alpha
Helix 20	AC2	B	65	72	Right-handed 310
Helix 21	AC3	B	74	100	Right-handed alpha
Helix 22	AC4	B	117	121	Right-handed alpha
Helix 23	AC5	B	125	145	Right-handed alpha
Helix 24	AC6	B	147	152	Right-handed alpha
Helix 25	AC7	B	175	182	Right-handed alpha
Helix 26	AC8	B	182	187	Right-handed alpha
Helix 27	AC9	B	191	215	Right-handed alpha
Helix 28	AD1	B	227	232	Right-handed alpha
Helix 29	AD2	B	233	236	Right-handed 310
Helix 30	AD3	B	238	245	Right-handed alpha
Helix 31	AD4	B	252	259	Right-handed alpha
Helix 32	AD5	B	328	331	Right-handed 310
Helix 33	AD6	B	349	357	Right-handed alpha
Helix 34	AD7	B	359	363	Right-handed 310
Helix 35	AD8	B	437	442	Right-handed alpha
Helix 36	AD9	B	452	481	Right-handed alpha
Helix 37	AE1	C	29	35	Right-handed alpha
Helix 38	AE2	C	65	72	Right-handed 310
Helix 39	AE3	C	74	100	Right-handed alpha
Helix 40	AE4	C	117	121	Right-handed alpha
Helix 41	AE5	C	125	145	Right-handed alpha
Helix 42	AE6	C	147	153	Right-handed alpha
Helix 43	AE7	C	175	182	Right-handed alpha
Helix 44	AE8	C	182	187	Right-handed alpha
Helix 45	AE9	C	191	215	Right-handed alpha
Helix 46	AF1	C	227	232	Right-handed alpha
Helix 47	AF2	C	233	236	Right-handed 310
Helix 48	AF3	C	238	245	Right-handed alpha
Helix 49	AF4	C	252	259	Right-handed alpha
Helix 50	AF5	C	328	331	Right-handed 310
Helix 51	AF6	C	349	357	Right-handed alpha
Helix 52	AF7	C	359	363	Right-handed 310
Helix 53	AF8	C	437	442	Right-handed alpha
Helix 54	AF9	C	452	481	Right-handed alpha
Helix 55	AG1	D	25	29	Right-handed 310
Helix 56	AG2	D	62	64	Right-handed 310
Helix 57	AG3	D	86	90	Right-handed 310
Helix 58	AG4	E	25	29	Right-handed 310
Helix 59	AG5	E	62	64	Right-handed 310
Helix 60	AG6	E	86	90	Right-handed 310
Helix 61	AG7	F	25	29	Right-handed 310
Helix 62	AG8	F	62	64	Right-handed 310
Helix 63	AG9	F	86	90	Right-handed 310

There are 24 sheets in PDB entry 9B9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	337	340	anti-parallel
Strand 3	A	38	48	parallel
Strand 4	A	286	298	anti-parallel
Strand 5	A	315	319	anti-parallel
Strand 6	A	322	326	anti-parallel
Strand 7	A	345	346	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	162	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	53	60	parallel
Strand 4	A	275	282	anti-parallel
Strand 5	A	263	269	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	113	116	anti-parallel
Strand 3	C	425	428	parallel
Strand 4	C	419	422	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	C	376	379	anti-parallel
Strand 3	C	382	385	anti-parallel
Strand 4	C	410	412	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	D	57	60	anti-parallel
Strand 3	D	45	50	anti-parallel
Strand 4	D	31	38	anti-parallel
Strand 5	D	91	99	anti-parallel
Strand 6	D	118	123	anti-parallel
Strand 7	D	9	12	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	D	57	60	anti-parallel
Strand 3	D	45	50	anti-parallel
Strand 4	D	31	38	anti-parallel
Strand 5	D	91	99	anti-parallel
Strand 6	D	113	114	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	306	310	anti-parallel
Strand 3	A	365	367	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	376	379	anti-parallel
Strand 4	B	123	124	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	422	first strand
Strand 2	A	425	428	anti-parallel
Strand 3	B	113	116	parallel
Strand 4	B	101	103	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	337	340	anti-parallel
Strand 3	B	38	48	parallel
Strand 4	B	286	298	anti-parallel
Strand 5	B	315	319	anti-parallel
Strand 6	B	322	326	anti-parallel
Strand 7	B	345	346	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	162	first strand
Strand 2	B	168	173	anti-parallel
Strand 3	B	53	60	parallel
Strand 4	B	275	282	anti-parallel
Strand 5	B	263	269	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	E	57	60	anti-parallel
Strand 3	E	45	50	anti-parallel
Strand 4	E	31	38	anti-parallel
Strand 5	E	91	99	anti-parallel
Strand 6	E	118	123	anti-parallel
Strand 7	E	9	12	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	E	57	60	anti-parallel
Strand 3	E	45	50	anti-parallel
Strand 4	E	31	38	anti-parallel
Strand 5	E	91	99	anti-parallel
Strand 6	E	113	114	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	303	first strand
Strand 2	B	306	310	anti-parallel
Strand 3	B	365	367	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	376	379	anti-parallel
Strand 4	C	123	124	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	422	first strand
Strand 2	B	425	428	anti-parallel
Strand 3	C	113	116	parallel
Strand 4	C	101	103	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	337	340	anti-parallel
Strand 3	C	38	48	parallel
Strand 4	C	286	298	anti-parallel
Strand 5	C	315	319	anti-parallel
Strand 6	C	322	326	anti-parallel
Strand 7	C	345	346	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	168	173	anti-parallel
Strand 3	C	53	60	parallel
Strand 4	C	275	282	anti-parallel
Strand 5	C	263	269	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	F	57	60	anti-parallel
Strand 3	F	45	50	anti-parallel
Strand 4	F	31	38	anti-parallel
Strand 5	F	91	99	anti-parallel
Strand 6	F	118	123	anti-parallel
Strand 7	F	9	12	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	F	57	60	anti-parallel
Strand 3	F	45	50	anti-parallel
Strand 4	F	31	38	anti-parallel
Strand 5	F	91	99	anti-parallel
Strand 6	F	113	114	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	303	first strand
Strand 2	C	306	310	anti-parallel
Strand 3	C	365	367	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	17	22	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	17	22	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	17	22	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B9E

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B9E