Analysis of interatomic Contacts of Structural Units in PDB entry:
9B9F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B9F entry

There are 10 chains in PDB entry 9B9F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 301	SER 412
B	ALA 301	SER 412
C	ALA 31	ILE 107
D	VAL 45	PHE 149
E	PRO 30	GLU 359
F	ALA 301	SER 412
G	ALA 301	SER 412
H	ALA 31	ILE 107
I	VAL 45	PHE 149
J	CYS 31	GLN 220

There are 29 helices in PDB entry 9B9F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	304	310	Right-handed alpha
Helix 2	AA2	A	324	328	Right-handed alpha
Helix 3	AA3	A	356	369	Right-handed alpha
Helix 4	AA4	A	370	373	Right-handed 310
Helix 5	AA5	B	304	310	Right-handed alpha
Helix 6	AA6	B	324	329	Right-handed alpha
Helix 7	AA7	B	356	369	Right-handed alpha
Helix 8	AA8	B	370	373	Right-handed 310
Helix 9	AA9	C	39	43	Right-handed 310
Helix 10	AB1	C	71	75	Right-handed 310
Helix 11	AB2	E	30	34	Right-handed 310
Helix 12	AB3	E	58	62	Right-handed 310
Helix 13	AB4	E	160	172	Right-handed alpha
Helix 14	AB5	E	305	311	Right-handed alpha
Helix 15	AB6	E	325	335	Right-handed alpha
Helix 16	AB7	F	304	310	Right-handed alpha
Helix 17	AB8	F	324	329	Right-handed alpha
Helix 18	AB9	F	356	369	Right-handed alpha
Helix 19	AC1	F	370	373	Right-handed 310
Helix 20	AC2	G	304	309	Right-handed alpha
Helix 21	AC3	G	324	328	Right-handed alpha
Helix 22	AC4	G	356	369	Right-handed alpha
Helix 23	AC5	G	370	373	Right-handed 310
Helix 24	AC6	H	39	43	Right-handed 310
Helix 25	AC7	H	71	75	Right-handed 310
Helix 26	AC8	J	58	63	Right-handed alpha
Helix 27	AC9	J	160	172	Right-handed alpha
Helix 28	AD1	J	305	311	Right-handed alpha
Helix 29	AD2	J	325	335	Right-handed alpha

There are 33 sheets in PDB entry 9B9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	408	412	anti-parallel
Strand 3	A	377	380	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	318	first strand
Strand 2	A	343	345	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	323	first strand
Strand 2	A	338	340	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	406	first strand
Strand 2	A	383	392	anti-parallel
Strand 3	D	74	76	parallel
Strand 4	D	50	52	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	303	first strand
Strand 2	B	408	411	anti-parallel
Strand 3	B	378	380	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	318	first strand
Strand 2	B	343	345	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	323	first strand
Strand 2	B	338	340	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	383	392	anti-parallel
Strand 3	B	395	406	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	45	48	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	70	first strand
Strand 2	C	51	59	anti-parallel
Strand 3	C	95	99	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	58	first strand
Strand 2	D	94	102	anti-parallel
Strand 3	D	83	91	anti-parallel
Strand 4	D	131	138	anti-parallel
Strand 5	D	124	128	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	68	first strand
Strand 2	D	146	148	anti-parallel
Strand 3	D	121	122	parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	141	first strand
Strand 2	E	115	119	parallel
Strand 3	E	86	91	parallel
Strand 4	E	186	189	parallel
Strand 5	E	213	219	anti-parallel
Strand 6	E	42	50	anti-parallel
Strand 7	E	352	357	anti-parallel
Strand 8	E	252	260	parallel
Strand 9	E	281	287	parallel
Strand 10	E	301	304	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	177	181	anti-parallel
Strand 3	E	67	72	parallel
Strand 4	E	105	109	parallel
Strand 5	E	131	133	parallel
Strand 6	E	152	154	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	226	first strand
Strand 2	E	341	349	anti-parallel
Strand 3	E	235	243	parallel
Strand 4	E	271	277	parallel
Strand 5	E	290	298	parallel
Strand 6	E	267	268	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	226	first strand
Strand 2	E	341	349	anti-parallel
Strand 3	E	235	243	parallel
Strand 4	E	271	277	parallel
Strand 5	E	290	298	parallel
Strand 6	E	312	315	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	302	303	first strand
Strand 2	F	408	412	anti-parallel
Strand 3	F	377	380	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	316	318	first strand
Strand 2	F	343	345	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	321	323	first strand
Strand 2	F	338	340	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	395	406	first strand
Strand 2	F	383	392	anti-parallel
Strand 3	I	74	76	parallel
Strand 4	I	50	52	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	302	303	first strand
Strand 2	G	408	412	anti-parallel
Strand 3	G	377	380	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	316	318	first strand
Strand 2	G	343	345	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	321	323	first strand
Strand 2	G	338	340	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	333	335	first strand
Strand 2	G	383	392	anti-parallel
Strand 3	G	395	406	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	35	first strand
Strand 2	H	45	48	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	70	first strand
Strand 2	H	51	59	anti-parallel
Strand 3	H	95	99	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	55	58	first strand
Strand 2	I	94	102	anti-parallel
Strand 3	I	83	91	anti-parallel
Strand 4	I	131	138	anti-parallel
Strand 5	I	124	128	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	68	first strand
Strand 2	I	146	148	anti-parallel
Strand 3	I	121	122	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	107	108	first strand
Strand 2	I	111	112	anti-parallel

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There are 10 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	138	140	first strand
Strand 2	J	115	119	parallel
Strand 3	J	86	91	parallel
Strand 4	J	186	189	parallel
Strand 5	J	212	219	anti-parallel
Strand 6	J	42	50	anti-parallel
Strand 7	J	352	357	anti-parallel
Strand 8	J	252	260	parallel
Strand 9	J	281	287	parallel
Strand 10	J	301	304	parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	56	first strand
Strand 2	J	177	181	anti-parallel
Strand 3	J	66	72	parallel
Strand 4	J	104	109	parallel
Strand 5	J	131	133	parallel
Strand 6	J	152	154	parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	223	226	first strand
Strand 2	J	343	349	anti-parallel
Strand 3	J	234	243	parallel
Strand 4	J	270	277	parallel
Strand 5	J	290	298	parallel
Strand 6	J	267	268	parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	223	226	first strand
Strand 2	J	343	349	anti-parallel
Strand 3	J	234	243	parallel
Strand 4	J	270	277	parallel
Strand 5	J	290	298	parallel
Strand 6	J	312	315	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B9F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B9F