Analysis of interatomic Contacts of Structural Units in PDB entry:
9B9J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9B9J entry

There are 4 chains in PDB entry 9B9J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	PRO 450
B	ARG 64	CYS 442
H	ASP 1	SER 112
L	ASP 1	LYS 107

There are 22 helices in PDB entry 9B9J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	86	Right-handed alpha
Helix 2	AA2	A	184	189	Right-handed alpha
Helix 3	AA3	A	196	204	Right-handed alpha
Helix 4	AA4	A	223	227	Right-handed 310
Helix 5	AA5	A	350	353	Right-handed 310
Helix 6	AA6	A	438	440	Right-handed 310
Helix 7	AA7	B	132	134	Right-handed 310
Helix 8	AA8	B	135	143	Right-handed alpha
Helix 9	AA9	B	144	154	Right-handed alpha
Helix 10	AB1	B	179	185	Right-handed alpha
Helix 11	AB2	B	208	218	Right-handed alpha
Helix 12	AB3	B	230	241	Right-handed alpha
Helix 13	AB4	B	242	245	Right-handed 310
Helix 14	AB5	B	267	272	Right-handed alpha
Helix 15	AB6	B	290	293	Right-handed 310
Helix 16	AB7	B	298	309	Right-handed alpha
Helix 17	AB8	B	321	332	Right-handed alpha
Helix 18	AB9	B	346	360	Right-handed alpha
Helix 19	AC1	B	382	384	Right-handed 310
Helix 20	AC2	B	390	392	Right-handed 310
Helix 21	AC3	H	82	86	Right-handed 310
Helix 22	AC4	L	79	83	Right-handed 310

There are 20 sheets in PDB entry 9B9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	442	446	anti-parallel
Strand 3	A	432	436	anti-parallel
Strand 4	A	419	423	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	34	39	anti-parallel
Strand 3	A	54	59	anti-parallel
Strand 4	A	68	70	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	120	121	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	108	first strand
Strand 2	A	111	116	anti-parallel
Strand 3	A	134	139	anti-parallel
Strand 4	A	144	148	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	172	first strand
Strand 2	A	178	182	anti-parallel
Strand 3	A	191	195	anti-parallel
Strand 4	A	217	218	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	238	first strand
Strand 2	A	247	256	anti-parallel
Strand 3	A	259	265	anti-parallel
Strand 4	A	272	277	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	292	first strand
Strand 2	A	301	306	anti-parallel
Strand 3	A	323	327	anti-parallel
Strand 4	A	340	343	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	312	first strand
Strand 2	A	318	320	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	330	first strand
Strand 2	A	333	334	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	359	first strand
Strand 2	A	368	373	anti-parallel
Strand 3	A	383	387	anti-parallel
Strand 4	A	400	402	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	98	104	anti-parallel
Strand 3	B	434	441	parallel
Strand 4	B	421	427	anti-parallel
Strand 5	B	361	366	anti-parallel
Strand 6	B	394	396	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	116	first strand
Strand 2	B	403	412	anti-parallel
Strand 3	B	373	380	anti-parallel
Strand 4	B	386	388	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	206	first strand
Strand 2	B	160	167	anti-parallel
Strand 3	B	123	130	parallel
Strand 4	B	251	258	parallel
Strand 5	B	311	317	parallel
Strand 6	B	335	339	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	287	288	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9B9J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9B9J