Analysis of interatomic Contacts of Structural Units in PDB entry:
9B9Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9B9Q entry

There are 6 chains in PDB entry 9B9Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3GLU 273
B
 PRO 2GLU 273
C
 PRO 2GLU 273
F
 PRO 192ARG 202
G
 PRO 192ARG 203
H
 GLU 193ARG 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9B9Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 32Right-handed alpha
Helix 2
AA2
A
95 104Right-handed alpha
Helix 3
AA3
A
111 131Right-handed alpha
Helix 4
AA4
A
159 175Right-handed alpha
Helix 5
AA5
A
186 193Right-handed alpha
Helix 6
AA6
A
197 206Right-handed alpha
Helix 7
AA7
A
265 267Right-handed 310
Helix 8
AA8
B
13 32Right-handed alpha
Helix 9
AA9
B
33 37Right-handed 310
Helix 10
AB1
B
95 106Right-handed alpha
Helix 11
AB2
B
111 131Right-handed alpha
Helix 12
AB3
B
161 176Right-handed alpha
Helix 13
AB4
B
186 196Right-handed alpha
Helix 14
AB5
B
197 207Right-handed alpha
Helix 15
AB6
B
265 267Right-handed 310
Helix 16
AB7
C
13 32Right-handed alpha
Helix 17
AB8
C
33 37Right-handed 310
Helix 18
AB9
C
95 106Right-handed alpha
Helix 19
AC1
C
111 131Right-handed alpha
Helix 20
AC2
C
159 174Right-handed alpha
Helix 21
AC3
C
186 193Right-handed alpha
Helix 22
AC4
C
197 206Right-handed alpha
Helix 23
AC5
C
246 250Right-handed 310
Helix 24
AC6
C
265 267Right-handed 310
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There are 9 sheets in PDB entry 9B9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
83 84anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 94first strand
Strand 2
A
251 262anti-parallel
Strand 3
A
232 243anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 212first strand
Strand 2
A
181 185parallel
Strand 3
A
221 225anti-parallel
Strand 4
A
269 271anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
231 243parallel
Strand 3
B
251 263anti-parallel
Strand 4
B
88 94anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
83 84anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 212first strand
Strand 2
B
181 185parallel
Strand 3
B
221 225anti-parallel
Strand 4
B
269 271anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 43first strand
Strand 2
C
231 243parallel
Strand 3
C
251 263anti-parallel
Strand 4
C
88 94anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 53first strand
Strand 2
C
81 84anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 212first strand
Strand 2
C
181 185parallel
Strand 3
C
221 225anti-parallel
Strand 4
C
269 271anti-parallel
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