Analysis of interatomic Contacts of Structural Units in PDB entry:
9BAD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BAD entry

There are 3 chains in PDB entry 9BAD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 49	TYR 375
B	GLU 46	TYR 375
C	ASP 49	VAL 82

There are 53 helices in PDB entry 9BAD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	62	Right-handed 310
Helix 2	AA2	A	81	88	Right-handed alpha
Helix 3	AA3	A	89	95	Right-handed 310
Helix 4	AA4	A	107	111	Right-handed 310
Helix 5	AA5	A	112	128	Right-handed alpha
Helix 6	AA6	A	143	155	Right-handed alpha
Helix 7	AA7	A	176	189	Right-handed alpha
Helix 8	AA8	A	190	194	Right-handed 310
Helix 9	AA9	A	248	252	Right-handed 310
Helix 10	AB1	A	276	285	Right-handed alpha
Helix 11	AB2	A	301	314	Right-handed alpha
Helix 12	AB3	A	332	337	Right-handed alpha
Helix 13	AB4	A	347	360	Right-handed alpha
Helix 14	AB5	A	364	375	Right-handed alpha
Helix 15	AB6	B	82	88	Right-handed alpha
Helix 16	AB7	B	89	95	Right-handed 310
Helix 17	AB8	B	107	111	Right-handed 310
Helix 18	AB9	B	112	128	Right-handed alpha
Helix 19	AC1	B	143	155	Right-handed alpha
Helix 20	AC2	B	176	189	Right-handed alpha
Helix 21	AC3	B	190	194	Right-handed 310
Helix 22	AC4	B	248	252	Right-handed 310
Helix 23	AC5	B	276	285	Right-handed alpha
Helix 24	AC6	B	301	314	Right-handed alpha
Helix 25	AC7	B	332	337	Right-handed alpha
Helix 26	AC8	B	347	360	Right-handed alpha
Helix 27	AC9	B	364	375	Right-handed alpha
Helix 28	AD1	C	82	89	Right-handed alpha
Helix 29	AD2	C	90	95	Right-handed 310
Helix 30	AD3	C	107	111	Right-handed 310
Helix 31	AD4	C	112	128	Right-handed alpha
Helix 32	AD5	C	143	155	Right-handed alpha
Helix 33	AD6	C	176	189	Right-handed alpha
Helix 34	AD7	C	190	194	Right-handed 310
Helix 35	AD8	C	248	252	Right-handed 310
Helix 36	AD9	C	276	285	Right-handed alpha
Helix 37	AE1	C	301	314	Right-handed alpha
Helix 38	AE2	C	332	337	Right-handed alpha
Helix 39	AE3	C	347	360	Right-handed alpha
Helix 40	AE4	C	364	375	Right-handed alpha
Helix 41	AE5	D	85	89	Right-handed alpha
Helix 42	AE6	D	90	95	Right-handed 310
Helix 43	AE7	D	107	111	Right-handed 310
Helix 44	AE8	D	112	129	Right-handed alpha
Helix 45	AE9	D	143	155	Right-handed alpha
Helix 46	AF1	D	176	189	Right-handed alpha
Helix 47	AF2	D	190	194	Right-handed 310
Helix 48	AF3	D	248	252	Right-handed 310
Helix 49	AF4	D	276	285	Right-handed alpha
Helix 50	AF5	D	301	314	Right-handed alpha
Helix 51	AF6	D	332	338	Right-handed alpha
Helix 52	AF7	D	347	360	Right-handed alpha
Helix 53	AF8	D	364	375	Right-handed alpha

There are 15 sheets in PDB entry 9BAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	102	first strand
Strand 2	A	52	57	parallel
Strand 3	A	134	138	parallel
Strand 4	A	161	164	parallel
Strand 5	A	199	202	parallel
Strand 6	A	205	208	anti-parallel
Strand 7	A	232	234	anti-parallel
Strand 8	A	238	240	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	76	76	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	223	224	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	C	242	244	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	A	289	294	parallel
Strand 3	A	317	322	parallel
Strand 4	A	340	342	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	102	first strand
Strand 2	B	52	57	parallel
Strand 3	B	134	138	parallel
Strand 4	B	161	164	parallel
Strand 5	B	199	202	parallel
Strand 6	B	205	208	anti-parallel
Strand 7	B	232	234	anti-parallel
Strand 8	B	238	240	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	223	224	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	D	242	244	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	269	first strand
Strand 2	B	289	294	parallel
Strand 3	B	317	322	parallel
Strand 4	B	340	342	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	102	first strand
Strand 2	C	52	57	parallel
Strand 3	C	134	138	parallel
Strand 4	C	161	164	parallel
Strand 5	C	199	202	parallel
Strand 6	C	205	208	anti-parallel
Strand 7	C	232	234	anti-parallel
Strand 8	C	238	240	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	214	first strand
Strand 2	C	223	224	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	269	first strand
Strand 2	C	289	294	parallel
Strand 3	C	317	322	parallel
Strand 4	C	340	342	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	102	first strand
Strand 2	D	52	57	parallel
Strand 3	D	134	138	parallel
Strand 4	D	161	164	parallel
Strand 5	D	199	202	parallel
Strand 6	D	205	208	anti-parallel
Strand 7	D	232	234	anti-parallel
Strand 8	D	238	240	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	223	224	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	269	first strand
Strand 2	D	289	294	parallel
Strand 3	D	317	322	parallel
Strand 4	D	340	342	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BAD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BAD