Analysis of interatomic Contacts of Structural Units in PDB entry:
9BAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BAM entry

There is 1 chain in PDB entry 9BAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 49ILE 594
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9BAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 64Right-handed alpha
Helix 2
AA2
A
67 74Right-handed alpha
Helix 3
AA3
A
74 79Right-handed alpha
Helix 4
AA4
A
85 91Right-handed alpha
Helix 5
AA5
A
98 103Right-handed alpha
Helix 6
AA6
A
103 112Right-handed alpha
Helix 7
AA7
A
112 123Right-handed alpha
Helix 8
AA8
A
127 150Right-handed alpha
Helix 9
AA9
A
158 163Right-handed alpha
Helix 10
AB1
A
172 191Right-handed alpha
Helix 11
AB2
A
208 227Right-handed alpha
Helix 12
AB3
A
231 244Right-handed alpha
Helix 13
AB4
A
252 256Right-handed 310
Helix 14
AB5
A
280 288Right-handed alpha
Helix 15
AB6
A
298 308Right-handed alpha
Helix 16
AB7
A
312 316Right-handed alpha
Helix 17
AB8
A
338 349Right-handed alpha
Helix 18
AB9
A
371 374Right-handed 310
Helix 19
AC1
A
375 385Right-handed alpha
Helix 20
AC2
A
385 390Right-handed alpha
Helix 21
AC3
A
391 400Right-handed alpha
Helix 22
AC4
A
405 409Right-handed 310
Helix 23
AC5
A
418 432Right-handed alpha
Helix 24
AC6
A
439 459Right-handed alpha
Helix 25
AC7
A
466 477Right-handed alpha
Helix 26
AC8
A
482 495Right-handed alpha
Helix 27
AC9
A
498 510Right-handed alpha
Helix 28
AD1
A
516 520Right-handed 310
Helix 29
AD2
A
523 527Right-handed 310
Helix 30
AD3
A
546 551Right-handed alpha
Helix 31
AD4
A
551 563Right-handed alpha
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There are 3 sheets in PDB entry 9BAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 259first strand
Strand 2
A
414 417anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
402 403anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
336 337anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il