Analysis of interatomic Contacts of Structural Units in PDB entry:
9BAO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BAO entry

There are 8 chains in PDB entry 9BAO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 289	GLY 440
B	ASP 459	ARG 560
C	PRO 289	GLY 440
D	ASP 459	ARG 560
E	GLU 1	PRO 219
F	SER 1	GLU 212
G	GLU 1	PRO 219
H	SER 1	GLU 212

There are 14 helices in PDB entry 9BAO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	290	302	Right-handed alpha
Helix 2	AA2	A	425	439	Right-handed alpha
Helix 3	AA3	B	504	517	Right-handed alpha
Helix 4	AA4	C	290	302	Right-handed alpha
Helix 5	AA5	C	424	439	Right-handed alpha
Helix 6	AA6	D	504	517	Right-handed alpha
Helix 7	AA7	E	28	32	Right-handed 310
Helix 8	AA8	E	163	165	Right-handed 310
Helix 9	AA9	F	120	127	Right-handed alpha
Helix 10	AB1	F	182	188	Right-handed alpha
Helix 11	AB2	G	28	32	Right-handed 310
Helix 12	AB3	G	163	165	Right-handed 310
Helix 13	AB4	H	120	127	Right-handed alpha
Helix 14	AB5	H	182	186	Right-handed alpha

There are 26 sheets in PDB entry 9BAO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	315	first strand
Strand 2	B	468	471	parallel
Strand 3	B	482	484	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	465	first strand
Strand 2	B	487	489	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	479	first strand
Strand 2	B	531	540	anti-parallel
Strand 3	B	543	554	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	520	first strand
Strand 2	G	105	110	anti-parallel
Strand 3	G	92	101	anti-parallel
Strand 4	G	114	118	anti-parallel
Strand 5	G	10	12	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	520	first strand
Strand 2	G	105	110	anti-parallel
Strand 3	G	92	101	anti-parallel
Strand 4	G	34	40	anti-parallel
Strand 5	G	44	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	528	first strand
Strand 2	B	557	560	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	315	first strand
Strand 2	D	468	471	parallel
Strand 3	D	482	484	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	463	465	first strand
Strand 2	D	487	489	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	477	479	first strand
Strand 2	D	531	540	anti-parallel
Strand 3	D	543	554	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	519	520	first strand
Strand 2	E	105	110	anti-parallel
Strand 3	E	92	101	anti-parallel
Strand 4	E	114	118	anti-parallel
Strand 5	E	10	12	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	519	520	first strand
Strand 2	E	105	110	anti-parallel
Strand 3	E	92	101	anti-parallel
Strand 4	E	34	40	anti-parallel
Strand 5	E	44	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	528	first strand
Strand 2	D	557	560	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	131	first strand
Strand 2	E	142	150	anti-parallel
Strand 3	E	183	191	anti-parallel
Strand 4	E	170	172	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	201	206	anti-parallel
Strand 3	E	211	216	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	19	24	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	48	first strand
Strand 2	F	33	37	anti-parallel
Strand 3	F	88	90	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	117	first strand
Strand 2	F	128	136	anti-parallel
Strand 3	F	173	181	anti-parallel
Strand 4	F	159	162	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	144	149	anti-parallel
Strand 3	F	190	196	anti-parallel
Strand 4	F	204	209	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	G	18	23	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	127	131	first strand
Strand 2	G	142	150	anti-parallel
Strand 3	G	183	191	anti-parallel
Strand 4	G	170	172	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	161	first strand
Strand 2	G	201	206	anti-parallel
Strand 3	G	211	216	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	67	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	48	first strand
Strand 2	H	33	37	anti-parallel
Strand 3	H	88	90	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	113	117	first strand
Strand 2	H	128	136	anti-parallel
Strand 3	H	173	181	anti-parallel
Strand 4	H	159	162	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	149	first strand
Strand 2	H	190	196	anti-parallel
Strand 3	H	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BAO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BAO