Analysis of interatomic Contacts of Structural Units in PDB entry:
9BAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BAP entry

There is 1 chain in PDB entry 9BAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 161TYR 1241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9BAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
163 179Right-handed alpha
Helix 2
AA2
A
208 213Right-handed alpha
Helix 3
AA3
A
283 311Right-handed alpha
Helix 4
AA4
A
317 322Right-handed alpha
Helix 5
AA5
A
322 329Right-handed alpha
Helix 6
AA6
A
334 343Right-handed alpha
Helix 7
AA7
A
349 356Right-handed alpha
Helix 8
AA8
A
357 366Right-handed alpha
Helix 9
AA9
A
371 375Right-handed 310
Helix 10
AB1
A
376 381Right-handed alpha
Helix 11
AB2
A
414 421Right-handed alpha
Helix 12
AB3
A
425 429Right-handed alpha
Helix 13
AB4
A
547 551Right-handed 310
Helix 14
AB5
A
640 644Right-handed 310
Helix 15
AB6
A
686 690Right-handed 310
Helix 16
AB7
A
850 860Right-handed alpha
Helix 17
AB8
A
871 882Right-handed alpha
Helix 18
AB9
A
894 904Right-handed alpha
Helix 19
AC1
A
938 959Right-handed alpha
Helix 20
AC2
A
981 993Right-handed alpha
Helix 21
AC3
A
1005 1008Right-handed 310
Helix 22
AC4
A
1068 1073Right-handed alpha
Helix 23
AC5
A
1189 1197Right-handed alpha
Helix 24
AC6
A
1208 1218Right-handed alpha
Helix 25
AC7
A
1221 1237Right-handed alpha
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There are 11 sheets in PDB entry 9BAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
186 197anti-parallel
Strand 3
A
272 279parallel
Strand 4
A
261 264anti-parallel
Strand 5
A
232 243anti-parallel
Strand 6
A
222 229anti-parallel
Strand 7
A
186 197anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
407 409anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
430 431parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 559first strand
Strand 2
A
581 589anti-parallel
Strand 3
A
604 611anti-parallel
Strand 4
A
630 635anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 559first strand
Strand 2
A
581 589anti-parallel
Strand 3
A
604 611anti-parallel
Strand 4
A
645 646anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 658first strand
Strand 2
A
669 671parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 676first strand
Strand 2
A
681 684anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
776 779first strand
Strand 2
A
710 713anti-parallel
Strand 3
A
723 733anti-parallel
Strand 4
A
738 748anti-parallel
Strand 5
A
761 772anti-parallel
Strand 6
A
803 811parallel
Strand 7
A
781 784parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
776 779first strand
Strand 2
A
710 713anti-parallel
Strand 3
A
723 733anti-parallel
Strand 4
A
738 748anti-parallel
Strand 5
A
761 772anti-parallel
Strand 6
A
803 811parallel
Strand 7
A
814 817anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
891 892first strand
Strand 2
A
862 869parallel
Strand 3
A
840 845parallel
Strand 4
A
919 922parallel
Strand 5
A
962 968parallel
Strand 6
A
1014 1021anti-parallel
Strand 7
A
996 1003anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1044 1045first strand
Strand 2
A
1055 1056anti-parallel
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