Analysis of interatomic Contacts of Structural Units in PDB entry:
9BAQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BAQ entry

There are 10 chains in PDB entry 9BAQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 128	TYR 1241
B	LYS 189	ILE 251
C	LYS 189	ASP 254
D	THR 6	ARG 8
D	SER 10	ARG 17
F	THR 3	ARG 8
F	SER 10	GLY 13
G	A 398	T 415
H	A 421	T 426
H	C 428	T 438

There are 39 helices in PDB entry 9BAQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	163	179	Right-handed alpha
Helix 2	AA2	A	208	212	Right-handed 310
Helix 3	AA3	A	266	268	Right-handed 310
Helix 4	AA4	A	283	309	Right-handed alpha
Helix 5	AA5	A	317	320	Right-handed 310
Helix 6	AA6	A	321	331	Right-handed alpha
Helix 7	AA7	A	334	343	Right-handed alpha
Helix 8	AA8	A	349	356	Right-handed alpha
Helix 9	AA9	A	356	367	Right-handed alpha
Helix 10	AB1	A	371	375	Right-handed 310
Helix 11	AB2	A	376	382	Right-handed alpha
Helix 12	AB3	A	414	422	Right-handed alpha
Helix 13	AB4	A	424	428	Right-handed 310
Helix 14	AB5	A	612	616	Right-handed 310
Helix 15	AB6	A	640	644	Right-handed 310
Helix 16	AB7	A	646	650	Right-handed 310
Helix 17	AB8	A	687	691	Right-handed 310
Helix 18	AB9	A	750	752	Right-handed 310
Helix 19	AC1	A	792	797	Right-handed 310
Helix 20	AC2	A	850	860	Right-handed alpha
Helix 21	AC3	A	871	882	Right-handed alpha
Helix 22	AC4	A	894	905	Right-handed alpha
Helix 23	AC5	A	938	959	Right-handed alpha
Helix 24	AC6	A	970	972	Right-handed 310
Helix 25	AC7	A	977	980	Right-handed 310
Helix 26	AC8	A	981	993	Right-handed alpha
Helix 27	AC9	A	1005	1008	Right-handed 310
Helix 28	AD1	A	1068	1073	Right-handed alpha
Helix 29	AD2	A	1100	1109	Right-handed alpha
Helix 30	AD3	A	1118	1124	Right-handed alpha
Helix 31	AD4	A	1125	1127	Right-handed 310
Helix 32	AD5	A	1131	1138	Right-handed alpha
Helix 33	AD6	A	1189	1197	Right-handed alpha
Helix 34	AD7	A	1208	1219	Right-handed alpha
Helix 35	AD8	A	1221	1237	Right-handed alpha
Helix 36	AD9	B	228	236	Right-handed alpha
Helix 37	AE1	B	236	247	Right-handed alpha
Helix 38	AE2	C	229	234	Right-handed alpha
Helix 39	AE3	C	236	247	Right-handed alpha

There are 13 sheets in PDB entry 9BAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	C	248	250	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	206	first strand
Strand 2	A	186	197	anti-parallel
Strand 3	A	272	279	parallel
Strand 4	A	261	264	anti-parallel
Strand 5	A	232	243	anti-parallel
Strand 6	A	222	229	anti-parallel
Strand 7	A	186	197	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	406	409	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	A	430	431	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	560	first strand
Strand 2	A	580	589	anti-parallel
Strand 3	A	604	609	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	632	first strand
Strand 2	A	673	676	parallel
Strand 3	A	681	684	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	658	first strand
Strand 2	A	669	671	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	779	first strand
Strand 2	A	710	713	anti-parallel
Strand 3	A	723	733	anti-parallel
Strand 4	A	738	748	anti-parallel
Strand 5	A	761	772	anti-parallel
Strand 6	A	805	811	parallel
Strand 7	A	814	817	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	889	892	first strand
Strand 2	A	862	869	parallel
Strand 3	A	840	845	parallel
Strand 4	A	919	923	parallel
Strand 5	A	962	968	parallel
Strand 6	A	1014	1021	anti-parallel
Strand 7	A	996	1003	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1044	1045	first strand
Strand 2	A	1055	1056	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1154	1155	first strand
Strand 2	A	1178	1180	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	207	first strand
Strand 2	B	212	219	anti-parallel
Strand 3	B	224	227	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	206	first strand
Strand 2	C	213	219	anti-parallel
Strand 3	C	224	228	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BAQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BAQ