Analysis of interatomic Contacts of Structural Units in PDB entry:
9BAS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BAS entry

There are 2 chains in PDB entry 9BAS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 45LYS 523
A
 LYS 45LYS 523
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9BAS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
61 65Right-handed 310
Helix 2
AA2
B
71 81Right-handed alpha
Helix 3
AA3
B
93 104Right-handed alpha
Helix 4
AA4
B
106 111Right-handed 310
Helix 5
AA5
B
129 137Right-handed alpha
Helix 6
AA6
B
165 170Right-handed 310
Helix 7
AA7
B
220 224Right-handed 310
Helix 8
AA8
B
229 233Right-handed 310
Helix 9
AA9
B
249 253Right-handed 310
Helix 10
AB1
B
255 257Right-handed 310
Helix 11
AB2
B
258 274Right-handed alpha
Helix 12
AB3
B
305 328Right-handed alpha
Helix 13
AB4
B
330 332Right-handed 310
Helix 14
AB5
B
375 380Right-handed alpha
Helix 15
AB6
B
405 415Right-handed alpha
Helix 16
AB7
B
429 435Right-handed alpha
Helix 17
AB8
B
469 476Right-handed 310
Helix 18
AB9
B
505 522Right-handed alpha
Helix 19
AC1
A
61 65Right-handed 310
Helix 20
AC2
A
71 81Right-handed alpha
Helix 21
AC3
A
93 104Right-handed alpha
Helix 22
AC4
A
106 111Right-handed 310
Helix 23
AC5
A
129 137Right-handed alpha
Helix 24
AC6
A
165 170Right-handed 310
Helix 25
AC7
A
220 224Right-handed 310
Helix 26
AC8
A
229 233Right-handed 310
Helix 27
AC9
A
255 257Right-handed 310
Helix 28
AD1
A
258 274Right-handed alpha
Helix 29
AD2
A
305 328Right-handed alpha
Helix 30
AD3
A
330 332Right-handed 310
Helix 31
AD4
A
375 379Right-handed 310
Helix 32
AD5
A
405 414Right-handed alpha
Helix 33
AD6
A
429 435Right-handed alpha
Helix 34
AD7
A
469 476Right-handed 310
Helix 35
AD8
A
505 521Right-handed alpha
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There are 10 sheets in PDB entry 9BAS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
B
189 190anti-parallel
Strand 3
B
173 177anti-parallel
Strand 4
B
140 146parallel
Strand 5
B
279 284parallel
Strand 6
B
47 53parallel
Strand 7
B
334 340parallel
Strand 8
B
383 386anti-parallel
Strand 9
B
82 84anti-parallel
Strand 10
B
395 397parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
401 402parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 206first strand
Strand 2
B
245 247anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 237first strand
Strand 2
B
240 241anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 447first strand
Strand 2
B
451 455anti-parallel
Strand 3
B
458 461anti-parallel
Strand 4
B
487 490anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
189 190anti-parallel
Strand 3
A
173 177anti-parallel
Strand 4
A
140 146parallel
Strand 5
A
279 284parallel
Strand 6
A
47 53parallel
Strand 7
A
334 340parallel
Strand 8
A
383 386anti-parallel
Strand 9
A
82 84anti-parallel
Strand 10
A
395 397parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
401 402parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
245 247anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
240 241anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 447first strand
Strand 2
A
451 455anti-parallel
Strand 3
A
458 461anti-parallel
Strand 4
A
487 490anti-parallel
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