Analysis of interatomic Contacts of Structural Units in PDB entry:
9BAT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BAT entry

There are 2 chains in PDB entry 9BAT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 58THR 502
B
 THR 58ARG 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9BAT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 80Right-handed alpha
Helix 2
AA2
A
80 93Right-handed alpha
Helix 3
AA3
A
110 119Right-handed alpha
Helix 4
AA4
A
131 140Right-handed alpha
Helix 5
AA5
A
148 163Right-handed alpha
Helix 6
AA6
A
164 184Right-handed alpha
Helix 7
AA7
A
185 187Right-handed 310
Helix 8
AA8
A
193 211Right-handed alpha
Helix 9
AA9
A
212 218Right-handed alpha
Helix 10
AB1
A
221 233Right-handed alpha
Helix 11
AB2
A
255 273Right-handed alpha
Helix 12
AB3
A
280 287Right-handed alpha
Helix 13
AB4
A
297 310Right-handed alpha
Helix 14
AB5
A
313 330Right-handed alpha
Helix 15
AB6
A
330 346Right-handed alpha
Helix 16
AB7
A
353 358Right-handed alpha
Helix 17
AB8
A
360 374Right-handed alpha
Helix 18
AB9
A
404 409Right-handed alpha
Helix 19
AC1
A
422 427Right-handed 310
Helix 20
AC2
A
430 435Right-handed alpha
Helix 21
AC3
A
451 469Right-handed alpha
Helix 22
AC4
A
476 478Right-handed 310
Helix 23
AC5
B
73 80Right-handed alpha
Helix 24
AC6
B
80 93Right-handed alpha
Helix 25
AC7
B
110 119Right-handed alpha
Helix 26
AC8
B
148 163Right-handed alpha
Helix 27
AC9
B
164 183Right-handed alpha
Helix 28
AD1
B
184 187Right-handed 310
Helix 29
AD2
B
194 211Right-handed alpha
Helix 30
AD3
B
213 218Right-handed alpha
Helix 31
AD5
B
254 273Right-handed alpha
Helix 32
AD6
B
280 288Right-handed alpha
Helix 33
AD8
B
313 330Right-handed alpha
Helix 34
AD9
B
330 345Right-handed alpha
Helix 35
AE1
B
353 359Right-handed alpha
Helix 36
AE2
B
360 374Right-handed alpha
Helix 37
AE3
B
404 409Right-handed alpha
Helix 38
AE4
B
422 427Right-handed 310
Helix 39
AE5
B
430 435Right-handed alpha
Helix 40
AE6
B
451 469Right-handed alpha
Helix 41
AE7
B
476 478Right-handed 310
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There are 7 sheets in PDB entry 9BAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
400 403parallel
Strand 4
A
380 383anti-parallel
Strand 5
A
125 126anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
400 403parallel
Strand 4
A
380 383anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
496 500anti-parallel
Strand 3
A
470 474anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
A
393 395anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 100first strand
Strand 2
B
103 108anti-parallel
Strand 3
B
400 403parallel
Strand 4
B
380 384anti-parallel
Strand 5
B
125 126anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 193first strand
Strand 2
B
495 500anti-parallel
Strand 3
B
470 474anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 390first strand
Strand 2
B
393 395anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il