Analysis of interatomic Contacts of Structural Units in PDB entry:
9BAU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BAU entry

There are 2 chains in PDB entry 9BAU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 33	LEU 517
B	ALA 33	LEU 517

There are 36 helices in PDB entry 9BAU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	55	Right-handed 310
Helix 2	AA2	A	61	70	Right-handed alpha
Helix 3	AA3	A	83	94	Right-handed alpha
Helix 4	AA4	A	96	101	Right-handed 310
Helix 5	AA5	A	119	126	Right-handed alpha
Helix 6	AA6	A	157	161	Right-handed 310
Helix 7	AA7	A	212	216	Right-handed 310
Helix 8	AA8	A	221	225	Right-handed 310
Helix 9	AA9	A	241	245	Right-handed 310
Helix 10	AB1	A	247	249	Right-handed 310
Helix 11	AB2	A	250	266	Right-handed alpha
Helix 12	AB3	A	287	291	Right-handed 310
Helix 13	AB4	A	297	320	Right-handed alpha
Helix 14	AB5	A	367	371	Right-handed 310
Helix 15	AB6	A	396	405	Right-handed alpha
Helix 16	AB7	A	420	426	Right-handed alpha
Helix 17	AB8	A	460	468	Right-handed alpha
Helix 18	AB9	A	496	513	Right-handed alpha
Helix 19	AC1	B	51	55	Right-handed 310
Helix 20	AC2	B	61	70	Right-handed alpha
Helix 21	AC3	B	83	94	Right-handed alpha
Helix 22	AC4	B	96	101	Right-handed 310
Helix 23	AC5	B	119	126	Right-handed alpha
Helix 24	AC6	B	157	161	Right-handed 310
Helix 25	AC7	B	212	216	Right-handed 310
Helix 26	AC8	B	222	225	Right-handed 310
Helix 27	AC9	B	241	245	Right-handed 310
Helix 28	AD1	B	247	249	Right-handed 310
Helix 29	AD2	B	250	267	Right-handed alpha
Helix 30	AD3	B	287	291	Right-handed 310
Helix 31	AD4	B	297	320	Right-handed alpha
Helix 32	AD5	B	367	371	Right-handed 310
Helix 33	AD6	B	396	405	Right-handed alpha
Helix 34	AD7	B	420	426	Right-handed alpha
Helix 35	AD8	B	460	468	Right-handed alpha
Helix 36	AD9	B	496	513	Right-handed alpha

There are 11 sheets in PDB entry 9BAU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	181	182	anti-parallel
Strand 3	A	165	169	anti-parallel
Strand 4	A	130	136	parallel
Strand 5	A	271	276	parallel
Strand 6	A	37	43	parallel
Strand 7	A	326	332	parallel
Strand 8	A	375	378	anti-parallel
Strand 9	A	72	74	anti-parallel
Strand 10	A	386	388	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	392	393	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	198	first strand
Strand 2	A	237	239	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	232	233	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	438	first strand
Strand 2	A	443	447	anti-parallel
Strand 3	A	450	453	anti-parallel
Strand 4	A	478	481	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	181	182	anti-parallel
Strand 3	B	165	169	anti-parallel
Strand 4	B	130	136	parallel
Strand 5	B	271	276	parallel
Strand 6	B	37	43	parallel
Strand 7	B	326	332	parallel
Strand 8	B	375	378	anti-parallel
Strand 9	B	72	74	anti-parallel
Strand 10	B	386	388	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	392	393	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	198	first strand
Strand 2	B	237	239	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	342	343	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	229	first strand
Strand 2	B	232	233	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	439	first strand
Strand 2	B	442	447	anti-parallel
Strand 3	B	450	453	anti-parallel
Strand 4	B	478	481	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BAU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BAU