Analysis of interatomic Contacts of Structural Units in PDB entry:
9BAZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BAZ entry

There are 3 chains in PDB entry 9BAZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 125ASP 1242
B
 LYS 189ILE 251
C
 PRO 191ILE 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 9BAZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
163 178Right-handed alpha
Helix 2
AA2
A
208 214Right-handed alpha
Helix 3
AA3
A
264 268Right-handed 310
Helix 4
AA4
A
283 310Right-handed alpha
Helix 5
AA5
A
315 320Right-handed 310
Helix 6
AA6
A
321 331Right-handed alpha
Helix 7
AA7
A
334 343Right-handed alpha
Helix 8
AA8
A
349 356Right-handed alpha
Helix 9
AA9
A
356 367Right-handed alpha
Helix 10
AB1
A
371 375Right-handed 310
Helix 11
AB2
A
376 382Right-handed alpha
Helix 12
AB3
A
414 423Right-handed alpha
Helix 13
AB4
A
424 428Right-handed 310
Helix 14
AB5
A
547 551Right-handed 310
Helix 15
AB6
A
612 616Right-handed 310
Helix 16
AB7
A
687 691Right-handed 310
Helix 17
AB8
A
750 752Right-handed 310
Helix 18
AB9
A
850 860Right-handed alpha
Helix 19
AC1
A
871 882Right-handed alpha
Helix 20
AC2
A
894 904Right-handed alpha
Helix 21
AC3
A
938 959Right-handed alpha
Helix 22
AC4
A
970 972Right-handed 310
Helix 23
AC5
A
977 980Right-handed 310
Helix 24
AC6
A
981 993Right-handed alpha
Helix 25
AC7
A
1005 1008Right-handed 310
Helix 26
AC8
A
1068 1073Right-handed alpha
Helix 27
AC9
A
1100 1110Right-handed alpha
Helix 28
AD1
A
1118 1124Right-handed alpha
Helix 29
AD2
A
1125 1127Right-handed 310
Helix 30
AD3
A
1131 1138Right-handed alpha
Helix 31
AD4
A
1189 1197Right-handed alpha
Helix 32
AD5
A
1208 1218Right-handed alpha
Helix 33
AD6
A
1221 1237Right-handed alpha
Helix 34
AD7
B
228 236Right-handed alpha
Helix 35
AD8
B
236 246Right-handed alpha
Helix 36
AD9
C
192 197Right-handed alpha
Helix 37
AE1
C
228 236Right-handed alpha
Helix 38
AE2
C
236 247Right-handed alpha
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There are 13 sheets in PDB entry 9BAZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 249first strand
Strand 2
A
131 134anti-parallel
Strand 3
C
248 250parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
B
224 227parallel
Strand 3
B
214 219anti-parallel
Strand 4
B
199 205anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
186 197anti-parallel
Strand 3
A
222 229anti-parallel
Strand 4
A
232 240anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
186 197anti-parallel
Strand 3
A
272 279parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
407 409anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
430 431parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 559first strand
Strand 2
A
581 589anti-parallel
Strand 3
A
604 611anti-parallel
Strand 4
A
628 635anti-parallel
Strand 5
A
669 676parallel
Strand 6
A
656 658parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 559first strand
Strand 2
A
581 589anti-parallel
Strand 3
A
604 611anti-parallel
Strand 4
A
628 635anti-parallel
Strand 5
A
669 676parallel
Strand 6
A
681 684anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
776 779first strand
Strand 2
A
710 713anti-parallel
Strand 3
A
723 733anti-parallel
Strand 4
A
738 748anti-parallel
Strand 5
A
761 772anti-parallel
Strand 6
A
803 811parallel
Strand 7
A
781 782parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
776 779first strand
Strand 2
A
710 713anti-parallel
Strand 3
A
723 733anti-parallel
Strand 4
A
738 748anti-parallel
Strand 5
A
761 772anti-parallel
Strand 6
A
803 811parallel
Strand 7
A
814 817anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
862 866first strand
Strand 2
A
840 845parallel
Strand 3
A
919 922parallel
Strand 4
A
962 968parallel
Strand 5
A
1014 1021anti-parallel
Strand 6
A
996 1003anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
868 869first strand
Strand 2
A
891 892parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 206first strand
Strand 2
C
213 219anti-parallel
Strand 3
C
224 227anti-parallel
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