Analysis of interatomic Contacts of Structural Units in PDB entry:
9BB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BB9 entry

There are 2 chains in PDB entry 9BB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 34LYS 515
B
 PRO 35LYS 515
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9BB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 53Right-handed 310
Helix 2
AA2
A
59 68Right-handed alpha
Helix 3
AA3
A
81 90Right-handed alpha
Helix 4
AA4
A
94 98Right-handed 310
Helix 5
AA5
A
119 127Right-handed alpha
Helix 6
AA6
A
173 176Right-handed 310
Helix 7
AA7
A
177 187Right-handed alpha
Helix 8
AA8
A
214 218Right-handed 310
Helix 9
AA9
A
227 258Right-handed alpha
Helix 10
AB1
A
260 262Right-handed 310
Helix 11
AB2
A
284 289Right-handed alpha
Helix 12
AB3
A
313 322Right-handed alpha
Helix 13
AB4
A
384 391Right-handed alpha
Helix 14
AB5
A
391 403Right-handed alpha
Helix 15
AB6
A
407 412Right-handed alpha
Helix 16
AB7
A
413 415Right-handed 310
Helix 17
AB8
A
439 441Right-handed 310
Helix 18
AB9
A
442 461Right-handed alpha
Helix 19
AC1
A
462 466Right-handed 310
Helix 20
AC2
A
469 491Right-handed alpha
Helix 21
AC3
A
498 514Right-handed alpha
Helix 22
AC4
B
49 53Right-handed 310
Helix 23
AC5
B
59 69Right-handed alpha
Helix 24
AC6
B
81 90Right-handed alpha
Helix 25
AC7
B
94 98Right-handed 310
Helix 26
AC8
B
119 127Right-handed alpha
Helix 27
AC9
B
173 176Right-handed 310
Helix 28
AD1
B
177 187Right-handed alpha
Helix 29
AD2
B
214 218Right-handed 310
Helix 30
AD3
B
227 259Right-handed alpha
Helix 31
AD4
B
284 289Right-handed alpha
Helix 32
AD5
B
313 322Right-handed alpha
Helix 33
AD6
B
384 391Right-handed alpha
Helix 34
AD7
B
391 403Right-handed alpha
Helix 35
AD8
B
407 412Right-handed alpha
Helix 36
AD9
B
413 415Right-handed 310
Helix 37
AE1
B
439 441Right-handed 310
Helix 38
AE2
B
442 461Right-handed alpha
Helix 39
AE3
B
462 466Right-handed 310
Helix 40
AE4
B
469 491Right-handed alpha
Helix 41
AE5
B
498 514Right-handed alpha
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There are 6 sheets in PDB entry 9BB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
130 134parallel
Strand 3
A
192 197parallel
Strand 4
A
36 42parallel
Strand 5
A
264 270parallel
Strand 6
A
292 296anti-parallel
Strand 7
A
70 72anti-parallel
Strand 8
A
303 305parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
309 310parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 350first strand
Strand 2
A
360 364anti-parallel
Strand 3
A
368 373anti-parallel
Strand 4
A
421 425anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
130 134parallel
Strand 3
B
192 197parallel
Strand 4
B
36 42parallel
Strand 5
B
264 270parallel
Strand 6
B
292 295anti-parallel
Strand 7
B
70 72anti-parallel
Strand 8
B
303 305parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
309 310parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 350first strand
Strand 2
B
360 364anti-parallel
Strand 3
B
368 373anti-parallel
Strand 4
B
421 425anti-parallel
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