Analysis of interatomic Contacts of Structural Units in PDB entry:
9BBA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BBA entry

There are 4 chains in PDB entry 9BBA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 43	ILE 652
B	LYS 43	ILE 652
C	LYS 43	ILE 652
D	LYS 43	ILE 652

There are135 helices in PDB entry 9BBA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	60	Right-handed 310
Helix 2	AA2	A	70	79	Right-handed alpha
Helix 3	AA3	A	92	103	Right-handed alpha
Helix 4	AA4	A	105	110	Right-handed 310
Helix 5	AA5	A	128	136	Right-handed alpha
Helix 6	AA6	A	165	169	Right-handed 310
Helix 7	AA7	A	185	190	Right-handed 310
Helix 8	AA8	A	194	199	Right-handed alpha
Helix 9	AA9	A	204	208	Right-handed 310
Helix 10	AB1	A	217	248	Right-handed alpha
Helix 11	AB2	A	250	252	Right-handed 310
Helix 12	AB3	A	274	278	Right-handed alpha
Helix 13	AB4	A	287	294	Right-handed 310
Helix 14	AB5	A	295	299	Right-handed 310
Helix 15	AB6	A	314	323	Right-handed alpha
Helix 16	AB7	A	342	349	Right-handed alpha
Helix 17	AB8	A	392	395	Right-handed 310
Helix 18	AB9	A	396	408	Right-handed alpha
Helix 19	AC1	A	412	417	Right-handed alpha
Helix 20	AC2	A	418	420	Right-handed 310
Helix 21	AC3	A	443	445	Right-handed 310
Helix 22	AC4	A	446	464	Right-handed alpha
Helix 23	AC5	A	466	470	Right-handed 310
Helix 24	AC6	A	471	480	Right-handed alpha
Helix 25	AC7	A	482	503	Right-handed alpha
Helix 26	AC8	A	504	506	Right-handed 310
Helix 27	AC9	A	507	520	Right-handed alpha
Helix 28	AD1	A	523	538	Right-handed alpha
Helix 29	AD2	A	539	543	Right-handed 310
Helix 30	AD3	A	544	555	Right-handed alpha
Helix 31	AD4	A	557	573	Right-handed alpha
Helix 32	AD5	A	576	587	Right-handed alpha
Helix 33	AD6	A	589	608	Right-handed alpha
Helix 34	AD7	A	629	650	Right-handed alpha
Helix 35	AD8	B	56	60	Right-handed 310
Helix 36	AD9	B	70	78	Right-handed alpha
Helix 37	AE1	B	92	103	Right-handed alpha
Helix 38	AE2	B	105	110	Right-handed 310
Helix 39	AE3	B	128	136	Right-handed alpha
Helix 40	AE4	B	165	169	Right-handed 310
Helix 41	AE5	B	185	190	Right-handed 310
Helix 42	AE6	B	194	199	Right-handed alpha
Helix 43	AE7	B	217	248	Right-handed alpha
Helix 44	AE8	B	250	252	Right-handed 310
Helix 45	AE9	B	274	277	Right-handed 310
Helix 46	AF1	B	287	294	Right-handed 310
Helix 47	AF2	B	295	299	Right-handed 310
Helix 48	AF3	B	314	324	Right-handed alpha
Helix 49	AF4	B	342	349	Right-handed alpha
Helix 50	AF5	B	392	395	Right-handed 310
Helix 51	AF6	B	396	408	Right-handed alpha
Helix 52	AF7	B	412	417	Right-handed alpha
Helix 53	AF8	B	418	420	Right-handed 310
Helix 54	AF9	B	443	445	Right-handed 310
Helix 55	AG1	B	446	464	Right-handed alpha
Helix 56	AG2	B	466	470	Right-handed 310
Helix 57	AG3	B	471	480	Right-handed alpha
Helix 58	AG4	B	482	502	Right-handed alpha
Helix 59	AG5	B	503	506	Right-handed 310
Helix 60	AG6	B	507	520	Right-handed alpha
Helix 61	AG7	B	523	538	Right-handed alpha
Helix 62	AG8	B	539	543	Right-handed 310
Helix 63	AG9	B	544	555	Right-handed alpha
Helix 64	AH1	B	557	573	Right-handed alpha
Helix 65	AH2	B	576	587	Right-handed alpha
Helix 66	AH3	B	589	608	Right-handed alpha
Helix 67	AH4	B	633	650	Right-handed alpha
Helix 68	AH5	C	56	60	Right-handed 310
Helix 69	AH6	C	70	79	Right-handed alpha
Helix 70	AH7	C	92	103	Right-handed alpha
Helix 71	AH8	C	105	110	Right-handed 310
Helix 72	AH9	C	128	136	Right-handed alpha
Helix 73	AI1	C	165	169	Right-handed 310
Helix 74	AI2	C	182	190	Right-handed 310
Helix 75	AI3	C	194	199	Right-handed alpha
Helix 76	AI4	C	204	208	Right-handed 310
Helix 77	AI5	C	217	248	Right-handed alpha
Helix 78	AI6	C	250	252	Right-handed 310
Helix 79	AI7	C	274	277	Right-handed 310
Helix 80	AI8	C	287	294	Right-handed 310
Helix 81	AI9	C	295	299	Right-handed 310
Helix 82	AJ1	C	314	323	Right-handed alpha
Helix 83	AJ2	C	342	348	Right-handed alpha
Helix 84	AJ3	C	392	395	Right-handed 310
Helix 85	AJ4	C	396	408	Right-handed alpha
Helix 86	AJ5	C	412	417	Right-handed alpha
Helix 87	AJ6	C	418	420	Right-handed 310
Helix 88	AJ7	C	443	445	Right-handed 310
Helix 89	AJ8	C	446	464	Right-handed alpha
Helix 90	AJ9	C	466	470	Right-handed 310
Helix 91	AK1	C	471	480	Right-handed alpha
Helix 92	AK2	C	482	502	Right-handed alpha
Helix 93	AK3	C	503	506	Right-handed 310
Helix 94	AK4	C	507	520	Right-handed alpha
Helix 95	AK5	C	523	538	Right-handed alpha
Helix 96	AK6	C	539	543	Right-handed 310
Helix 97	AK7	C	544	555	Right-handed alpha
Helix 98	AK8	C	557	573	Right-handed alpha
Helix 99	AK9	C	576	587	Right-handed alpha
Helix 100	AL1	C	589	608	Right-handed alpha
Helix 101	AL2	C	633	651	Right-handed alpha
Helix 102	AL3	D	56	60	Right-handed 310
Helix 103	AL4	D	70	78	Right-handed alpha
Helix 104	AL5	D	92	103	Right-handed alpha
Helix 105	AL6	D	105	110	Right-handed 310
Helix 106	AL7	D	128	137	Right-handed alpha
Helix 107	AL8	D	165	169	Right-handed 310
Helix 108	AL9	D	182	190	Right-handed 310
Helix 109	AM1	D	194	199	Right-handed alpha
Helix 110	AM2	D	204	208	Right-handed 310
Helix 111	AM3	D	217	248	Right-handed alpha
Helix 112	AM4	D	250	252	Right-handed 310
Helix 113	AM5	D	274	277	Right-handed 310
Helix 114	AM6	D	287	294	Right-handed 310
Helix 115	AM7	D	295	299	Right-handed 310
Helix 116	AM8	D	314	323	Right-handed alpha
Helix 117	AM9	D	342	349	Right-handed alpha
Helix 118	AN1	D	392	395	Right-handed 310
Helix 119	AN2	D	396	408	Right-handed alpha
Helix 120	AN3	D	412	417	Right-handed alpha
Helix 121	AN4	D	418	420	Right-handed 310
Helix 122	AN5	D	443	445	Right-handed 310
Helix 123	AN6	D	446	464	Right-handed alpha
Helix 124	AN7	D	466	470	Right-handed 310
Helix 125	AN8	D	471	480	Right-handed alpha
Helix 126	AN9	D	482	502	Right-handed alpha
Helix 127	AO1	D	503	506	Right-handed 310
Helix 128	AO2	D	507	520	Right-handed alpha
Helix 129	AO3	D	523	538	Right-handed alpha
Helix 130	AO4	D	539	543	Right-handed 310
Helix 131	AO5	D	544	555	Right-handed alpha
Helix 132	AO6	D	557	573	Right-handed alpha
Helix 133	AO7	D	576	587	Right-handed alpha
Helix 134	AO8	D	589	608	Right-handed alpha
Helix 135	AO9	D	633	650	Right-handed alpha

There are 12 sheets in PDB entry 9BBA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	160	first strand
Strand 2	A	139	143	parallel
Strand 3	A	175	181	parallel
Strand 4	A	46	52	parallel
Strand 5	A	254	260	parallel
Strand 6	A	282	285	anti-parallel
Strand 7	A	80	83	anti-parallel
Strand 8	A	304	306	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	280	first strand
Strand 2	A	86	87	anti-parallel
Strand 3	A	310	311	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	351	359	parallel
Strand 3	A	362	371	anti-parallel
Strand 4	A	374	379	anti-parallel
Strand 5	A	425	429	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	139	143	parallel
Strand 3	B	175	181	parallel
Strand 4	B	46	52	parallel
Strand 5	B	254	260	parallel
Strand 6	B	279	285	anti-parallel
Strand 7	B	80	87	anti-parallel
Strand 8	B	304	306	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	139	143	parallel
Strand 3	B	175	181	parallel
Strand 4	B	46	52	parallel
Strand 5	B	254	260	parallel
Strand 6	B	279	285	anti-parallel
Strand 7	B	80	87	anti-parallel
Strand 8	B	310	311	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	351	359	parallel
Strand 3	B	362	371	anti-parallel
Strand 4	B	374	379	anti-parallel
Strand 5	B	425	429	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	139	143	parallel
Strand 3	C	175	181	parallel
Strand 4	C	46	52	parallel
Strand 5	C	254	260	parallel
Strand 6	C	279	285	anti-parallel
Strand 7	C	80	87	anti-parallel
Strand 8	C	304	306	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	139	143	parallel
Strand 3	C	175	181	parallel
Strand 4	C	46	52	parallel
Strand 5	C	254	260	parallel
Strand 6	C	279	285	anti-parallel
Strand 7	C	80	87	anti-parallel
Strand 8	C	310	311	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	351	359	parallel
Strand 3	C	362	371	anti-parallel
Strand 4	C	374	379	anti-parallel
Strand 5	C	425	429	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	139	143	parallel
Strand 3	D	175	181	parallel
Strand 4	D	46	52	parallel
Strand 5	D	254	260	parallel
Strand 6	D	279	285	anti-parallel
Strand 7	D	80	87	anti-parallel
Strand 8	D	304	306	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	139	143	parallel
Strand 3	D	175	181	parallel
Strand 4	D	46	52	parallel
Strand 5	D	254	260	parallel
Strand 6	D	279	285	anti-parallel
Strand 7	D	80	87	anti-parallel
Strand 8	D	310	311	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	351	359	parallel
Strand 3	D	362	371	anti-parallel
Strand 4	D	374	379	anti-parallel
Strand 5	D	425	429	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BBA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BBA