Analysis of interatomic Contacts of Structural Units in PDB entry:
9BBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BBD entry

There are 2 chains in PDB entry 9BBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 42GLN 539
B
 LYS 42GLN 539
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 9BBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 63Right-handed 310
Helix 2
AA2
A
69 78Right-handed alpha
Helix 3
AA3
A
91 102Right-handed alpha
Helix 4
AA4
A
131 139Right-handed alpha
Helix 5
AA5
A
156 160Right-handed 310
Helix 6
AA6
A
180 185Right-handed alpha
Helix 7
AA7
A
197 201Right-handed 310
Helix 8
AA8
A
213 217Right-handed 310
Helix 9
AA9
A
226 257Right-handed alpha
Helix 10
AB1
A
283 288Right-handed alpha
Helix 11
AB2
A
295 297Right-handed 310
Helix 12
AB3
A
298 304Right-handed alpha
Helix 13
AB4
A
316 326Right-handed alpha
Helix 14
AB5
A
441 443Right-handed 310
Helix 15
AB6
A
444 463Right-handed alpha
Helix 16
AB7
A
464 468Right-handed 310
Helix 17
AB8
A
471 483Right-handed alpha
Helix 18
AB9
A
484 486Right-handed 310
Helix 19
AC1
A
488 498Right-handed alpha
Helix 20
AC2
A
505 509Right-handed 310
Helix 21
AC3
A
525 530Right-handed alpha
Helix 22
AC4
A
535 539Right-handed 310
Helix 23
AC5
B
59 63Right-handed 310
Helix 24
AC6
B
69 79Right-handed alpha
Helix 25
AC7
B
91 102Right-handed alpha
Helix 26
AC8
B
131 139Right-handed alpha
Helix 27
AC9
B
156 161Right-handed alpha
Helix 28
AD1
B
170 172Right-handed 310
Helix 29
AD2
B
180 185Right-handed alpha
Helix 30
AD3
B
197 201Right-handed 310
Helix 31
AD4
B
213 217Right-handed 310
Helix 32
AD5
B
226 257Right-handed alpha
Helix 33
AD6
B
283 288Right-handed alpha
Helix 34
AD7
B
295 297Right-handed 310
Helix 35
AD8
B
298 303Right-handed alpha
Helix 36
AD9
B
304 306Right-handed 310
Helix 37
AE1
B
316 326Right-handed alpha
Helix 38
AE2
B
441 443Right-handed 310
Helix 39
AE3
B
444 463Right-handed alpha
Helix 40
AE4
B
464 468Right-handed 310
Helix 41
AE5
B
471 483Right-handed alpha
Helix 42
AE6
B
484 486Right-handed 310
Helix 43
AE7
B
488 498Right-handed alpha
Helix 44
AE8
B
505 509Right-handed 310
Helix 45
AE9
B
525 530Right-handed alpha
Helix 46
AF1
B
535 539Right-handed 310
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There are 8 sheets in PDB entry 9BBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
174 176anti-parallel
Strand 3
A
142 148anti-parallel
Strand 4
A
190 196parallel
Strand 5
A
46 52parallel
Strand 6
A
263 269parallel
Strand 7
A
291 294anti-parallel
Strand 8
A
80 82anti-parallel
Strand 9
A
308 309parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
313 314parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
280 281anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 354first strand
Strand 2
A
364 368anti-parallel
Strand 3
A
372 377anti-parallel
Strand 4
A
422 427anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
174 176anti-parallel
Strand 3
B
142 148anti-parallel
Strand 4
B
190 196parallel
Strand 5
B
46 52parallel
Strand 6
B
263 269parallel
Strand 7
B
291 294anti-parallel
Strand 8
B
80 82anti-parallel
Strand 9
B
308 309parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
313 314parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 277first strand
Strand 2
B
280 281anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 354first strand
Strand 2
B
364 368anti-parallel
Strand 3
B
372 377anti-parallel
Strand 4
B
422 427anti-parallel
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