Analysis of interatomic Contacts of Structural Units in PDB entry:
9BC5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BC5 entry

There are 9 chains in PDB entry 9BC5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	GLY 490
B	PRO 214	GLY 490
C	PRO 2	GLY 490
D	PRO 2	GLY 490
E	PRO 2	GLY 490
F	PRO 2	GLY 490
G	PRO 2	GLY 490
H	T 1	G 41
I	C 1	A 41

There are126 helices in PDB entry 9BC5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	33	Right-handed alpha
Helix 2	AA2	A	50	72	Right-handed alpha
Helix 3	AA3	A	104	117	Right-handed alpha
Helix 4	AA4	A	149	151	Right-handed 310
Helix 5	AA5	A	152	157	Right-handed alpha
Helix 6	AA6	A	172	177	Right-handed alpha
Helix 7	AA7	A	181	202	Right-handed alpha
Helix 8	AA8	A	218	235	Right-handed alpha
Helix 9	AA9	A	238	246	Right-handed alpha
Helix 10	AB1	A	246	255	Right-handed alpha
Helix 11	AB2	A	258	277	Right-handed alpha
Helix 12	AB3	A	279	285	Right-handed alpha
Helix 13	AB4	A	296	305	Right-handed alpha
Helix 14	AB5	A	308	321	Right-handed alpha
Helix 15	AB6	A	339	351	Right-handed alpha
Helix 16	AB7	A	383	386	Right-handed 310
Helix 17	AB8	A	387	395	Right-handed alpha
Helix 18	AB9	A	438	443	Right-handed alpha
Helix 19	AC1	A	462	476	Right-handed alpha
Helix 20	AC2	B	218	234	Right-handed alpha
Helix 21	AC3	B	238	246	Right-handed alpha
Helix 22	AC4	B	246	255	Right-handed alpha
Helix 23	AC5	B	258	277	Right-handed alpha
Helix 24	AC6	B	279	285	Right-handed alpha
Helix 25	AC7	B	296	305	Right-handed alpha
Helix 26	AC8	B	308	321	Right-handed alpha
Helix 27	AC9	B	339	351	Right-handed alpha
Helix 28	AD1	B	383	385	Right-handed 310
Helix 29	AD2	B	386	395	Right-handed alpha
Helix 30	AD3	B	438	443	Right-handed alpha
Helix 31	AD4	B	462	476	Right-handed alpha
Helix 32	AD5	C	14	19	Right-handed alpha
Helix 33	AD6	C	23	33	Right-handed alpha
Helix 34	AD7	C	50	71	Right-handed alpha
Helix 35	AD8	C	101	121	Right-handed alpha
Helix 36	AD9	C	149	153	Right-handed 310
Helix 37	AE1	C	161	165	Right-handed 310
Helix 38	AE2	C	172	177	Right-handed alpha
Helix 39	AE3	C	181	197	Right-handed alpha
Helix 40	AE4	C	218	235	Right-handed alpha
Helix 41	AE5	C	238	255	Right-handed alpha
Helix 42	AE6	C	259	277	Right-handed alpha
Helix 43	AE7	C	280	285	Right-handed alpha
Helix 44	AE8	C	296	306	Right-handed alpha
Helix 45	AE9	C	308	321	Right-handed alpha
Helix 46	AF1	C	340	351	Right-handed alpha
Helix 47	AF2	C	383	386	Right-handed 310
Helix 48	AF3	C	387	395	Right-handed alpha
Helix 49	AF4	C	438	443	Right-handed alpha
Helix 50	AF5	C	462	476	Right-handed alpha
Helix 51	AF6	D	23	33	Right-handed alpha
Helix 52	AF7	D	50	72	Right-handed alpha
Helix 53	AF8	D	104	120	Right-handed alpha
Helix 54	AF9	D	149	151	Right-handed 310
Helix 55	AG1	D	152	157	Right-handed alpha
Helix 56	AG2	D	172	176	Right-handed 310
Helix 57	AG3	D	181	196	Right-handed alpha
Helix 58	AG4	D	218	235	Right-handed alpha
Helix 59	AG5	D	238	246	Right-handed alpha
Helix 60	AG6	D	246	253	Right-handed alpha
Helix 61	AG7	D	256	275	Right-handed alpha
Helix 62	AG8	D	280	285	Right-handed alpha
Helix 63	AG9	D	296	305	Right-handed alpha
Helix 64	AH1	D	308	321	Right-handed alpha
Helix 65	AH2	D	324	327	Right-handed 310
Helix 66	AH3	D	340	351	Right-handed alpha
Helix 67	AH4	D	386	395	Right-handed alpha
Helix 68	AH5	D	437	443	Right-handed alpha
Helix 69	AH6	D	462	476	Right-handed alpha
Helix 70	AH7	E	23	33	Right-handed alpha
Helix 71	AH8	E	50	71	Right-handed alpha
Helix 72	AH9	E	102	104	Right-handed 310
Helix 73	AI1	E	105	120	Right-handed alpha
Helix 74	AI2	E	149	153	Right-handed 310
Helix 75	AI3	E	181	194	Right-handed alpha
Helix 76	AI4	E	218	235	Right-handed alpha
Helix 77	AI5	E	238	246	Right-handed alpha
Helix 78	AI6	E	246	256	Right-handed alpha
Helix 79	AI7	E	262	277	Right-handed alpha
Helix 80	AI8	E	279	285	Right-handed alpha
Helix 81	AI9	E	296	305	Right-handed alpha
Helix 82	AJ1	E	308	321	Right-handed alpha
Helix 83	AJ2	E	324	327	Right-handed 310
Helix 84	AJ3	E	340	351	Right-handed alpha
Helix 85	AJ4	E	383	385	Right-handed 310
Helix 86	AJ5	E	386	395	Right-handed alpha
Helix 87	AJ6	E	438	443	Right-handed alpha
Helix 88	AJ7	E	455	459	Right-handed 310
Helix 89	AJ8	E	462	476	Right-handed alpha
Helix 90	AJ9	F	14	19	Right-handed alpha
Helix 91	AK1	F	23	33	Right-handed alpha
Helix 92	AK2	F	50	72	Right-handed alpha
Helix 93	AK3	F	101	120	Right-handed alpha
Helix 94	AK4	F	149	151	Right-handed 310
Helix 95	AK5	F	152	157	Right-handed alpha
Helix 96	AK6	F	181	204	Right-handed alpha
Helix 97	AK7	F	218	235	Right-handed alpha
Helix 98	AK8	F	238	246	Right-handed alpha
Helix 99	AK9	F	246	254	Right-handed alpha
Helix 100	AL1	F	256	277	Right-handed alpha
Helix 101	AL2	F	279	285	Right-handed alpha
Helix 102	AL3	F	296	305	Right-handed alpha
Helix 103	AL4	F	308	321	Right-handed alpha
Helix 104	AL5	F	339	351	Right-handed alpha
Helix 105	AL6	F	386	395	Right-handed alpha
Helix 106	AL7	F	437	443	Right-handed alpha
Helix 107	AL8	F	462	476	Right-handed alpha
Helix 108	AL9	G	23	33	Right-handed alpha
Helix 109	AM1	G	50	72	Right-handed alpha
Helix 110	AM2	G	105	120	Right-handed alpha
Helix 111	AM3	G	149	151	Right-handed 310
Helix 112	AM4	G	152	157	Right-handed alpha
Helix 113	AM5	G	161	165	Right-handed 310
Helix 114	AM6	G	175	179	Right-handed 310
Helix 115	AM7	G	181	201	Right-handed alpha
Helix 116	AM8	G	218	235	Right-handed alpha
Helix 117	AM9	G	238	254	Right-handed alpha
Helix 118	AN1	G	258	276	Right-handed alpha
Helix 119	AN2	G	279	285	Right-handed alpha
Helix 120	AN3	G	296	305	Right-handed alpha
Helix 121	AN4	G	308	321	Right-handed alpha
Helix 122	AN5	G	324	327	Right-handed 310
Helix 123	AN6	G	339	351	Right-handed alpha
Helix 124	AN7	G	387	395	Right-handed alpha
Helix 125	AN8	G	438	443	Right-handed alpha
Helix 126	AN9	G	462	476	Right-handed alpha

There are 33 sheets in PDB entry 9BC5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	78	84	anti-parallel
Strand 3	A	93	96	anti-parallel
Strand 4	A	4	8	anti-parallel
Strand 5	A	147	148	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	4	8	anti-parallel
Strand 3	A	93	96	anti-parallel
Strand 4	A	78	84	anti-parallel
Strand 5	A	167	170	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	374	378	parallel
Strand 3	A	416	420	parallel
Strand 4	A	329	333	parallel
Strand 5	A	447	449	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	401	first strand
Strand 2	A	409	411	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	A	433	434	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	356	first strand
Strand 2	B	375	378	parallel
Strand 3	B	416	420	parallel
Strand 4	B	329	333	parallel
Strand 5	B	447	449	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	403	first strand
Strand 2	B	406	411	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	428	first strand
Strand 2	B	433	434	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	89	96	anti-parallel
Strand 3	C	10	11	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	89	96	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	167	170	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	356	first strand
Strand 2	C	375	378	parallel
Strand 3	C	416	420	parallel
Strand 4	C	329	333	parallel
Strand 5	C	447	449	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	403	first strand
Strand 2	C	406	411	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	428	first strand
Strand 2	C	433	434	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	4	9	anti-parallel
Strand 3	D	147	148	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	4	9	anti-parallel
Strand 3	D	89	96	anti-parallel
Strand 4	D	79	84	anti-parallel
Strand 5	D	165	170	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	356	first strand
Strand 2	D	375	378	parallel
Strand 3	D	416	419	parallel
Strand 4	D	329	333	parallel
Strand 5	D	446	449	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	403	first strand
Strand 2	D	406	410	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	428	first strand
Strand 2	D	433	434	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	4	11	anti-parallel
Strand 3	E	147	148	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	4	11	anti-parallel
Strand 3	E	89	96	anti-parallel
Strand 4	E	78	84	anti-parallel
Strand 5	E	165	170	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	329	331	first strand
Strand 2	E	416	418	parallel
Strand 3	E	374	377	parallel
Strand 4	E	354	356	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	400	403	first strand
Strand 2	E	406	410	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	427	428	first strand
Strand 2	E	433	434	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	134	first strand
Strand 2	F	4	11	anti-parallel
Strand 3	F	147	148	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	134	first strand
Strand 2	F	4	11	anti-parallel
Strand 3	F	89	96	anti-parallel
Strand 4	F	78	83	anti-parallel
Strand 5	F	165	170	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	356	first strand
Strand 2	F	374	378	parallel
Strand 3	F	416	420	parallel
Strand 4	F	329	333	parallel
Strand 5	F	447	449	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	399	403	first strand
Strand 2	F	406	411	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	427	428	first strand
Strand 2	F	433	434	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	134	first strand
Strand 2	G	4	11	anti-parallel
Strand 3	G	147	148	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	134	first strand
Strand 2	G	4	11	anti-parallel
Strand 3	G	89	96	anti-parallel
Strand 4	G	79	84	anti-parallel
Strand 5	G	167	170	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	355	356	first strand
Strand 2	G	375	378	parallel
Strand 3	G	416	420	parallel
Strand 4	G	329	333	parallel
Strand 5	G	447	449	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	400	401	first strand
Strand 2	G	409	410	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	427	428	first strand
Strand 2	G	433	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BC5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BC5