Analysis of interatomic Contacts of Structural Units in PDB entry:
9BC8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BC8 entry

There are 8 chains in PDB entry 9BC8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	LEU 272
B	PRO 2	LEU 272
C	PRO 2	LEU 272
D	PRO 2	LEU 272
E	PRO 192	ARG 202
F	PRO 192	ARG 202
G	PRO 192	ARG 202
H	PRO 192	ARG 202

There are 35 helices in PDB entry 9BC8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	32	Right-handed alpha
Helix 2	AA2	A	33	38	Right-handed 310
Helix 3	AA3	A	95	106	Right-handed alpha
Helix 4	AA4	A	111	131	Right-handed alpha
Helix 5	AA5	A	157	176	Right-handed alpha
Helix 6	AA6	A	186	197	Right-handed alpha
Helix 7	AA7	A	197	206	Right-handed alpha
Helix 8	AA8	A	265	267	Right-handed 310
Helix 9	AA9	B	13	32	Right-handed alpha
Helix 10	AB1	B	32	38	Right-handed alpha
Helix 11	AB2	B	96	106	Right-handed alpha
Helix 12	AB3	B	111	131	Right-handed alpha
Helix 13	AB4	B	159	176	Right-handed alpha
Helix 14	AB5	B	186	195	Right-handed alpha
Helix 15	AB6	B	197	206	Right-handed alpha
Helix 16	AB7	B	265	269	Right-handed 310
Helix 17	AB8	C	2	6	Right-handed 310
Helix 18	AB9	C	13	32	Right-handed alpha
Helix 19	AC1	C	33	38	Right-handed alpha
Helix 20	AC2	C	95	104	Right-handed alpha
Helix 21	AC3	C	111	131	Right-handed alpha
Helix 22	AC4	C	159	175	Right-handed alpha
Helix 23	AC5	C	186	196	Right-handed alpha
Helix 24	AC6	C	198	207	Right-handed alpha
Helix 25	AC7	C	265	267	Right-handed 310
Helix 26	AC8	D	2	6	Right-handed 310
Helix 27	AC9	D	13	32	Right-handed alpha
Helix 28	AD1	D	33	38	Right-handed alpha
Helix 29	AD2	D	95	106	Right-handed alpha
Helix 30	AD3	D	111	131	Right-handed alpha
Helix 31	AD4	D	157	176	Right-handed alpha
Helix 32	AD5	D	186	193	Right-handed alpha
Helix 33	AD6	D	194	196	Right-handed 310
Helix 34	AD7	D	197	206	Right-handed alpha
Helix 35	AD8	D	265	267	Right-handed 310

There are 10 sheets in PDB entry 9BC8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	232	243	parallel
Strand 3	A	251	262	anti-parallel
Strand 4	A	87	94	anti-parallel
Strand 5	D	63	65	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	83	84	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	212	first strand
Strand 2	A	181	185	parallel
Strand 3	A	221	225	anti-parallel
Strand 4	A	269	271	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	83	84	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	95	first strand
Strand 2	B	250	262	anti-parallel
Strand 3	B	232	243	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	212	first strand
Strand 2	B	181	185	parallel
Strand 3	B	221	225	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	43	first strand
Strand 2	C	232	243	parallel
Strand 3	C	251	262	anti-parallel
Strand 4	C	88	94	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	212	first strand
Strand 2	C	181	185	parallel
Strand 3	C	221	225	anti-parallel
Strand 4	C	269	271	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	232	243	parallel
Strand 3	D	251	262	anti-parallel
Strand 4	D	88	94	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	212	first strand
Strand 2	D	181	185	parallel
Strand 3	D	221	225	anti-parallel
Strand 4	D	269	271	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BC8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BC8