Analysis of interatomic Contacts of Structural Units in PDB entry:
9BCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BCE entry

There are 2 chains in PDB entry 9BCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 89MSE 302
B
 VAL 90SER 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9BCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
103 118Right-handed alpha
Helix 2
AA2
A
168 176Right-handed alpha
Helix 3
AA3
A
180 186Right-handed 310
Helix 4
AA4
A
222 232Right-handed alpha
Helix 5
AA5
A
244 250Right-handed alpha
Helix 6
AA6
A
278 295Right-handed alpha
Helix 7
AA7
A
295 300Right-handed alpha
Helix 8
AA8
B
103 118Right-handed alpha
Helix 9
AA9
B
168 176Right-handed alpha
Helix 10
AB1
B
180 186Right-handed 310
Helix 11
AB2
B
222 232Right-handed alpha
Helix 12
AB3
B
244 250Right-handed alpha
Helix 13
AB4
B
272 276Right-handed 310
Helix 14
AB5
B
278 292Right-handed alpha
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There are 4 sheets in PDB entry 9BCE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 161first strand
Strand 2
A
265 272anti-parallel
Strand 3
A
141 145anti-parallel
Strand 4
A
92 98parallel
Strand 5
A
121 127parallel
Strand 6
B
215 220parallel
Strand 7
B
188 192parallel
Strand 8
B
236 240parallel
Strand 9
B
163 167anti-parallel
Strand 10
B
254 255anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
163 167anti-parallel
Strand 3
A
236 240anti-parallel
Strand 4
A
188 192parallel
Strand 5
A
215 220parallel
Strand 6
B
121 127parallel
Strand 7
B
92 98parallel
Strand 8
B
141 145parallel
Strand 9
B
265 270anti-parallel
Strand 10
B
155 161anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
210 213anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 203first strand
Strand 2
B
210 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il