Analysis of interatomic Contacts of Structural Units in PDB entry:
9BCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BCF entry

There are 6 chains in PDB entry 9BCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 113LEU 175
A
 VAL 179ILE 340
B
 ALA 1LEU 175
B
 VAL 179GLY 343
C
 SER 113LEU 175
C
 VAL 179ILE 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9BCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
115 120Right-handed 310
Helix 2
AA2
A
168 173Right-handed alpha
Helix 3
AA3
A
186 192Right-handed 310
Helix 4
AA4
A
193 198Right-handed alpha
Helix 5
AA5
A
267 270Right-handed 310
Helix 6
AA6
B
1 5Right-handed 310
Helix 7
AA7
B
7 17Right-handed alpha
Helix 8
AA8
B
25 33Right-handed alpha
Helix 9
AA9
B
34 38Right-handed 310
Helix 10
AB1
B
39 51Right-handed alpha
Helix 11
AB2
B
59 64Right-handed alpha
Helix 12
AB3
B
65 70Right-handed 310
Helix 13
AB4
B
78 90Right-handed alpha
Helix 14
AB5
B
98 107Right-handed alpha
Helix 15
AB6
B
114 119Right-handed 310
Helix 16
AB7
B
168 173Right-handed alpha
Helix 17
AB8
B
186 192Right-handed 310
Helix 18
AB9
B
193 198Right-handed alpha
Helix 19
AC1
C
114 120Right-handed 310
Helix 20
AC2
C
167 172Right-handed 310
Helix 21
AC3
C
186 192Right-handed 310
Helix 22
AC4
C
193 198Right-handed alpha
Helix 23
AC5
C
267 270Right-handed 310
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There are 3 sheets in PDB entry 9BCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 133first strand
Strand 2
A
136 147anti-parallel
Strand 3
A
152 159anti-parallel
Strand 4
A
328 338anti-parallel
Strand 5
A
310 319anti-parallel
Strand 6
A
259 266anti-parallel
Strand 7
A
271 281anti-parallel
Strand 8
A
287 298anti-parallel
Strand 9
A
203 211anti-parallel
Strand 10
A
216 226anti-parallel
Strand 11
A
229 239anti-parallel
Strand 12
A
122 133parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 133first strand
Strand 2
B
136 147anti-parallel
Strand 3
B
152 159anti-parallel
Strand 4
B
328 338anti-parallel
Strand 5
B
310 319anti-parallel
Strand 6
B
259 266anti-parallel
Strand 7
B
271 281anti-parallel
Strand 8
B
287 298anti-parallel
Strand 9
B
203 211anti-parallel
Strand 10
B
216 226anti-parallel
Strand 11
B
229 239anti-parallel
Strand 12
B
122 133parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 133first strand
Strand 2
C
136 147anti-parallel
Strand 3
C
152 159anti-parallel
Strand 4
C
328 338anti-parallel
Strand 5
C
310 319anti-parallel
Strand 6
C
259 266anti-parallel
Strand 7
C
271 281anti-parallel
Strand 8
C
287 298anti-parallel
Strand 9
C
203 211anti-parallel
Strand 10
C
216 226anti-parallel
Strand 11
C
229 239anti-parallel
Strand 12
C
122 133parallel
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