Analysis of interatomic Contacts of Structural Units in PDB entry:
9BCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BCJ entry

There are 3 chains in PDB entry 9BCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ARG 141
B
 VAL 1ALA 142
C
 LYS 36ASN 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 9BCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 16Right-handed alpha
Helix 2
AA2
A
17 19Right-handed 310
Helix 3
AA3
A
20 36Right-handed alpha
Helix 4
AA4
A
37 43Right-handed 310
Helix 5
AA5
A
52 72Right-handed alpha
Helix 6
AA6
A
75 80Right-handed alpha
Helix 7
AA7
A
80 89Right-handed alpha
Helix 8
AA8
A
94 113Right-handed alpha
Helix 9
AA9
A
118 138Right-handed alpha
Helix 10
AB1
B
4 16Right-handed alpha
Helix 11
AB2
B
22 35Right-handed alpha
Helix 12
AB3
B
36 46Right-handed 310
Helix 13
AB4
B
50 57Right-handed alpha
Helix 14
AB5
B
57 77Right-handed alpha
Helix 15
AB6
B
80 85Right-handed alpha
Helix 16
AB7
B
85 95Right-handed alpha
Helix 17
AB8
B
100 119Right-handed alpha
Helix 18
AB9
B
120 122Right-handed 310
Helix 19
AC1
B
123 142Right-handed alpha
Helix 20
AC2
C
45 50Right-handed 310
Helix 21
AC3
C
52 56Right-handed 310
Helix 22
AC4
C
72 76Right-handed 310
Helix 23
AC5
C
77 83Right-handed alpha
Helix 24
AC6
C
191 199Right-handed alpha
Helix 25
AC7
C
201 206Right-handed 310
Helix 26
AC8
C
212 217Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9BCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
120 124anti-parallel
Strand 3
C
131 141anti-parallel
Strand 4
C
113 116anti-parallel
Strand 5
C
95 105anti-parallel
Strand 6
C
66 70anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
120 124anti-parallel
Strand 3
C
131 141anti-parallel
Strand 4
C
145 152anti-parallel
Strand 5
C
155 169anti-parallel
Strand 6
C
172 177anti-parallel
Strand 7
C
223 228anti-parallel
Strand 8
C
37 42anti-parallel
Strand 9
C
95 105anti-parallel
Strand 10
C
66 70anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il