Analysis of interatomic Contacts of Structural Units in PDB entry:
9BCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BCM entry

There is 1 chain in PDB entry 9BCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 23GLN 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9BCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 51Right-handed alpha
Helix 2
AA2
A
63 68Right-handed 310
Helix 3
AA3
A
69 74Right-handed alpha
Helix 4
AA4
A
118 132Right-handed alpha
Helix 5
AA5
A
145 148Right-handed 310
Helix 6
AA6
A
149 156Right-handed alpha
Helix 7
AA7
A
167 180Right-handed alpha
Helix 8
AA8
A
181 185Right-handed 310
Helix 9
AA9
A
197 201Right-handed 310
Helix 10
AB1
A
205 208Right-handed 310
Helix 11
AB2
A
255 261Right-handed alpha
Helix 12
AB3
A
271 287Right-handed alpha
Helix 13
AB4
A
298 302Right-handed 310
Helix 14
AB5
A
323 333Right-handed alpha
Helix 15
AB6
A
351 365Right-handed alpha
Helix 16
AB7
A
407 412Right-handed alpha
Helix 17
AB8
A
424 431Right-handed alpha
Helix 18
AB9
A
442 452Right-handed alpha
Helix 19
AC1
A
464 474Right-handed alpha
Helix 20
AC2
A
496 510Right-handed alpha
Helix 21
AC3
A
510 522Right-handed alpha
Helix 22
AC4
A
523 525Right-handed 310
Helix 23
AC5
A
529 545Right-handed alpha
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There are 3 sheets in PDB entry 9BCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
55 61parallel
Strand 3
A
27 31parallel
Strand 4
A
139 143parallel
Strand 5
A
160 164parallel
Strand 6
A
265 268parallel
Strand 7
A
290 292parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
202 203anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 420first strand
Strand 2
A
369 373parallel
Strand 3
A
339 343parallel
Strand 4
A
434 439parallel
Strand 5
A
456 458parallel
Strand 6
A
479 481parallel
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