Analysis of interatomic Contacts of Structural Units in PDB entry:
9BCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BCP entry

There are 2 chains in PDB entry 9BCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 471GLU 809
A
 SER 473LYS 810
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 9BCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
545 557Right-handed alpha
Helix 2
AA2
B
587 594Right-handed alpha
Helix 3
AA3
B
600 620Right-handed alpha
Helix 4
AA4
B
660 666Right-handed alpha
Helix 5
AA5
B
671 676Right-handed alpha
Helix 6
AA6
B
685 703Right-handed alpha
Helix 7
AA7
B
715 725Right-handed alpha
Helix 8
AA8
B
741 751Right-handed alpha
Helix 9
AA9
B
761 773Right-handed alpha
Helix 10
AB1
B
774 776Right-handed 310
Helix 11
AB2
B
781 809Right-handed alpha
Helix 12
AB3
A
545 558Right-handed alpha
Helix 13
AB4
A
587 594Right-handed alpha
Helix 14
AB5
A
601 619Right-handed alpha
Helix 15
AB6
A
630 634Right-handed 310
Helix 16
AB7
A
659 668Right-handed alpha
Helix 17
AB8
A
671 677Right-handed alpha
Helix 18
AB9
A
685 702Right-handed alpha
Helix 19
AC1
A
715 726Right-handed alpha
Helix 20
AC2
A
741 752Right-handed alpha
Helix 21
AC3
A
761 773Right-handed alpha
Helix 22
AC4
A
780 810Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9BCP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
524 527first strand
Strand 2
B
530 536anti-parallel
Strand 3
B
577 581anti-parallel
Strand 4
B
566 569anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 526first strand
Strand 2
A
531 533anti-parallel
Strand 3
A
577 581anti-parallel
Strand 4
A
566 570anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il