Analysis of interatomic Contacts of Structural Units in PDB entry:
9BCV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BCV entry

There are 10 chains in PDB entry 9BCV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 845	ARG 1055
B	GLU 842	GLY 1052
G	UNK 1	UNK 119
H	UNK 1	UNK 112
J	UNK 1	UNK 117
I	UNK 1	UNK 112
C	UNK 1	UNK 115
D	UNK 1	UNK 106
E	UNK 1	UNK 116
F	UNK 1	UNK 106

There are 18 helices in PDB entry 9BCV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	845	849	Right-handed 310
Helix 2	AA2	A	854	863	Right-handed alpha
Helix 3	AA3	A	884	889	Right-handed alpha
Helix 4	AA4	A	893	913	Right-handed alpha
Helix 5	AA5	A	939	957	Right-handed alpha
Helix 6	AA6	A	996	1009	Right-handed alpha
Helix 7	AA7	A	1017	1028	Right-handed alpha
Helix 8	AA8	B	842	846	Right-handed 310
Helix 9	AA9	B	850	860	Right-handed alpha
Helix 10	AB1	B	889	909	Right-handed alpha
Helix 11	AB2	B	935	952	Right-handed alpha
Helix 12	AB3	B	993	1004	Right-handed alpha
Helix 13	AB4	B	1013	1024	Right-handed alpha
Helix 14	AB5	G	28	32	Right-handed 310
Helix 15	AB6	J	62	65	Right-handed 310
Helix 16	AB7	C	28	32	Right-handed 310
Helix 17	AB8	E	28	32	Right-handed 310
Helix 18	AB9	E	87	91	Right-handed 310

There are 23 sheets in PDB entry 9BCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	918	923	first strand
Strand 2	A	926	931	anti-parallel
Strand 3	A	870	881	anti-parallel
Strand 4	A	972	985	anti-parallel
Strand 5	A	991	995	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	918	923	first strand
Strand 2	A	926	931	anti-parallel
Strand 3	A	870	881	anti-parallel
Strand 4	A	972	985	anti-parallel
Strand 5	A	1013	1016	parallel
Strand 6	A	1047	1054	anti-parallel
Strand 7	A	1030	1038	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	914	919	first strand
Strand 2	B	922	927	anti-parallel
Strand 3	B	866	878	anti-parallel
Strand 4	B	967	981	anti-parallel
Strand 5	B	987	991	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	914	919	first strand
Strand 2	B	922	927	anti-parallel
Strand 3	B	866	878	anti-parallel
Strand 4	B	967	981	anti-parallel
Strand 5	B	1009	1012	parallel
Strand 6	B	1041	1050	anti-parallel
Strand 7	B	1026	1035	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	G	18	23	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	69	73	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	60	first strand
Strand 2	G	45	52	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	93	99	anti-parallel
Strand 5	G	108	111	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	19	24	anti-parallel
Strand 3	H	76	81	anti-parallel
Strand 4	H	68	71	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	108	111	parallel
Strand 3	H	91	96	anti-parallel
Strand 4	H	39	44	anti-parallel
Strand 5	H	52	55	anti-parallel
Strand 6	H	59	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	5	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	58	60	first strand
Strand 2	J	45	51	anti-parallel
Strand 3	J	34	39	anti-parallel
Strand 4	J	93	99	anti-parallel
Strand 5	J	108	111	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	58	60	first strand
Strand 2	J	45	51	anti-parallel
Strand 3	J	34	39	anti-parallel
Strand 4	J	93	99	anti-parallel
Strand 5	J	115	116	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	6	first strand
Strand 2	I	19	24	anti-parallel
Strand 3	I	76	81	anti-parallel
Strand 4	I	68	71	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	108	111	parallel
Strand 3	I	91	96	anti-parallel
Strand 4	I	39	44	anti-parallel
Strand 5	I	51	55	anti-parallel
Strand 6	I	59	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	50	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	93	97	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	103	105	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	22	first strand
Strand 2	D	72	75	anti-parallel
Strand 3	D	63	65	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	44	49	anti-parallel
Strand 3	D	33	38	anti-parallel
Strand 4	D	85	90	anti-parallel
Strand 5	D	97	98	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	69	73	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	111	115	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	50	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	102	105	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	46	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	102	105	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	97	98	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	24	first strand
Strand 2	F	70	75	anti-parallel
Strand 3	F	62	65	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BCV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BCV