Analysis of interatomic Contacts of Structural Units in PDB entry:
9BCZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BCZ entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 9BCZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 325
A
 GLU 327ILE 330
A
 SER 332PHE 643
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 9BCZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 12Right-handed alpha
Helix 2
AA2
A
13 16Right-handed 310
Helix 3
AA3
A
21 31Right-handed alpha
Helix 4
AA4
A
37 50Right-handed alpha
Helix 5
AA5
A
58 71Right-handed alpha
Helix 6
AA6
A
72 84Right-handed alpha
Helix 7
AA7
A
91 103Right-handed alpha
Helix 8
AA8
A
107 120Right-handed alpha
Helix 9
AA9
A
122 128Right-handed alpha
Helix 10
AB1
A
133 141Right-handed alpha
Helix 11
AB2
A
142 146Right-handed 310
Helix 12
AB3
A
149 154Right-handed 310
Helix 13
AB4
A
162 164Right-handed 310
Helix 14
AB5
A
187 196Right-handed alpha
Helix 15
AB6
A
208 212Right-handed 310
Helix 16
AB7
A
227 238Right-handed alpha
Helix 17
AB8
A
255 271Right-handed alpha
Helix 18
AB9
A
272 274Right-handed 310
Helix 19
AC1
A
306 314Right-handed alpha
Helix 20
AC2
A
375 379Right-handed alpha
Helix 21
AC3
A
391 399Right-handed alpha
Helix 22
AC4
A
409 419Right-handed alpha
Helix 23
AC5
A
419 430Right-handed alpha
Helix 24
AC6
A
448 453Right-handed alpha
Helix 25
AC7
A
467 477Right-handed alpha
Helix 26
AC8
A
478 483Right-handed 310
Helix 27
AC9
A
489 494Right-handed alpha
Helix 28
AD1
A
504 508Right-handed 310
Helix 29
AD2
A
545 549Right-handed 310
Helix 30
AD3
A
576 579Right-handed 310
Helix 31
AD4
A
606 608Right-handed 310
Helix 32
AD5
A
640 642Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 9BCZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
130 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
485 487anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
214 215anti-parallel
Strand 3
A
200 206anti-parallel
Strand 4
A
246 252parallel
Strand 5
A
297 300parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 325first strand
Strand 2
A
371 374anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
403 408parallel
Strand 3
A
432 435parallel
Strand 4
A
458 459parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 574first strand
Strand 2
A
511 521anti-parallel
Strand 3
A
624 638anti-parallel
Strand 4
A
611 618anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 553first strand
Strand 2
A
536 543anti-parallel
Strand 3
A
581 591anti-parallel
Strand 4
A
594 604anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il