Analysis of interatomic Contacts of Structural Units in PDB entry:
9BD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BD3 entry

There are 4 chains in PDB entry 9BD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 100GLU 312
B
 LYS 347GLY 366
C
 ASP 101GLU 312
D
 LYS 347GLY 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9BD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 127Right-handed alpha
Helix 2
AA2
A
133 140Right-handed alpha
Helix 3
AA3
A
141 146Right-handed 310
Helix 4
AA4
A
147 163Right-handed alpha
Helix 5
AA5
A
183 185Right-handed 310
Helix 6
AA6
A
199 214Right-handed alpha
Helix 7
AA7
A
219 229Right-handed alpha
Helix 8
AA8
A
242 249Right-handed alpha
Helix 9
AA9
A
249 254Right-handed alpha
Helix 10
AB1
A
275 282Right-handed alpha
Helix 11
AB2
A
283 297Right-handed alpha
Helix 12
AB3
A
304 312Right-handed alpha
Helix 13
AB4
B
348 366Right-handed alpha
Helix 14
AB5
C
102 127Right-handed alpha
Helix 15
AB6
C
133 140Right-handed alpha
Helix 16
AB7
C
141 146Right-handed 310
Helix 17
AB8
C
147 164Right-handed alpha
Helix 18
AB9
C
183 185Right-handed 310
Helix 19
AC1
C
199 214Right-handed alpha
Helix 20
AC2
C
219 229Right-handed alpha
Helix 21
AC3
C
242 249Right-handed alpha
Helix 22
AC4
C
249 254Right-handed alpha
Helix 23
AC5
C
275 282Right-handed alpha
Helix 24
AC6
C
283 296Right-handed alpha
Helix 25
AC7
C
304 312Right-handed alpha
Helix 26
AC8
D
348 365Right-handed alpha
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There are 4 sheets in PDB entry 9BD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
176 181anti-parallel
Strand 3
A
165 171anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
270 274anti-parallel
Strand 3
A
257 261anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 132first strand
Strand 2
C
176 181anti-parallel
Strand 3
C
165 171anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 218first strand
Strand 2
C
270 274anti-parallel
Strand 3
C
257 261anti-parallel
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