Analysis of interatomic Contacts of Structural Units in PDB entry:
9BD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BD4 entry

There are 2 chains in PDB entry 9BD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ALA 240
B
 MET 2ALA 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9BD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 24Right-handed 310
Helix 2
AA2
A
45 54Right-handed alpha
Helix 3
AA3
A
66 70Right-handed 310
Helix 4
AA4
A
73 79Right-handed alpha
Helix 5
AA5
A
80 91Right-handed alpha
Helix 6
AA6
A
91 102Right-handed alpha
Helix 7
AA7
A
116 129Right-handed alpha
Helix 8
AA8
A
143 148Right-handed alpha
Helix 9
AA9
A
158 163Right-handed 310
Helix 10
AB1
A
166 169Right-handed 310
Helix 11
AB2
A
170 175Right-handed alpha
Helix 12
AB3
A
191 205Right-handed alpha
Helix 13
AB4
A
224 239Right-handed alpha
Helix 14
AB5
B
22 24Right-handed 310
Helix 15
AB6
B
45 54Right-handed alpha
Helix 16
AB7
B
66 70Right-handed 310
Helix 17
AB8
B
73 79Right-handed alpha
Helix 18
AB9
B
80 91Right-handed alpha
Helix 19
AC1
B
91 102Right-handed alpha
Helix 20
AC2
B
116 129Right-handed alpha
Helix 21
AC3
B
143 148Right-handed alpha
Helix 22
AC4
B
158 163Right-handed 310
Helix 23
AC5
B
166 176Right-handed 310
Helix 24
AC6
B
192 205Right-handed alpha
Helix 25
AC7
B
224 240Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9BD4.

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 216first strand
Strand 2
A
179 184parallel
Strand 3
A
135 138parallel
Strand 4
A
105 115parallel
Strand 5
A
28 34parallel
Strand 6
A
57 61parallel
Strand 7
A
13 20anti-parallel
Strand 8
A
3 10anti-parallel
Strand 9
B
3 10anti-parallel
Strand 10
B
13 20anti-parallel
Strand 11
B
57 61anti-parallel
Strand 12
B
28 34parallel
Strand 13
B
105 115parallel
Strand 14
B
135 138parallel
Strand 15
B
179 184parallel
Strand 16
B
211 216parallel
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