Analysis of interatomic Contacts of Structural Units in PDB entry:
9BD5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9BD5 entry

There are 2 chains in PDB entry 9BD5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	GLN 512
B	LYS 2	GLN 512

There are 17 helices in PDB entry 9BD5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	110	114	Right-handed 310
Helix 2	AA2	A	122	126	Right-handed 310
Helix 3	AA3	A	157	164	Right-handed alpha
Helix 4	AA4	A	174	180	Right-handed alpha
Helix 5	AA5	A	184	186	Right-handed 310
Helix 6	AA6	A	305	308	Right-handed 310
Helix 7	AA7	A	435	443	Right-handed alpha
Helix 8	AA8	A	455	459	Right-handed 310
Helix 9	AA9	A	492	497	Right-handed alpha
Helix 10	AB1	B	110	114	Right-handed 310
Helix 11	AB2	B	122	126	Right-handed 310
Helix 12	AB3	B	157	164	Right-handed alpha
Helix 13	AB4	B	174	180	Right-handed alpha
Helix 14	AB5	B	184	186	Right-handed 310
Helix 15	AB6	B	435	440	Right-handed alpha
Helix 16	AB7	B	455	459	Right-handed 310
Helix 17	AB8	B	492	497	Right-handed alpha

There are 14 sheets in PDB entry 9BD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	26	37	anti-parallel
Strand 3	A	46	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	26	37	anti-parallel
Strand 3	A	68	74	parallel
Strand 4	A	136	139	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	167	173	parallel
Strand 3	A	147	152	anti-parallel
Strand 4	A	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	230	233	anti-parallel
Strand 3	A	188	196	anti-parallel
Strand 4	A	247	254	parallel
Strand 5	A	297	303	anti-parallel
Strand 6	A	271	275	anti-parallel
Strand 7	A	280	287	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	331	336	parallel
Strand 3	A	311	316	anti-parallel
Strand 4	A	261	265	anti-parallel
Strand 5	A	290	292	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	386	first strand
Strand 2	A	366	376	anti-parallel
Strand 3	A	404	411	parallel
Strand 4	A	471	478	anti-parallel
Strand 5	A	427	433	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	467	first strand
Strand 2	A	417	421	anti-parallel
Strand 3	A	484	490	anti-parallel
Strand 4	A	501	506	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	26	37	anti-parallel
Strand 3	B	46	51	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	26	37	anti-parallel
Strand 3	B	68	75	parallel
Strand 4	B	137	139	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	167	173	parallel
Strand 3	B	146	152	anti-parallel
Strand 4	B	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	230	233	anti-parallel
Strand 3	B	188	196	anti-parallel
Strand 4	B	247	254	parallel
Strand 5	B	297	303	anti-parallel
Strand 6	B	271	275	anti-parallel
Strand 7	B	280	287	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	242	first strand
Strand 2	B	331	336	parallel
Strand 3	B	311	316	anti-parallel
Strand 4	B	261	265	anti-parallel
Strand 5	B	290	292	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	386	first strand
Strand 2	B	366	376	anti-parallel
Strand 3	B	404	411	parallel
Strand 4	B	471	478	anti-parallel
Strand 5	B	427	433	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	467	first strand
Strand 2	B	417	421	anti-parallel
Strand 3	B	484	490	anti-parallel
Strand 4	B	501	506	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9BD5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9BD5