Analysis of interatomic Contacts of Structural Units in PDB entry:
9BDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BDC entry

There are 6 chains in PDB entry 9BDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 239ASP 447
B
 ARG 149VAL 355
E
 SER 220SER 1230
N
 A -24 C 3
R
 G 1 C 9
T
 G -11 T 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 9BDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
239 245Right-handed alpha
Helix 2
AA2
A
298 313Right-handed alpha
Helix 3
AA3
A
333 352Right-handed alpha
Helix 4
AA4
A
354 359Right-handed alpha
Helix 5
AA5
A
368 375Right-handed alpha
Helix 6
AA6
A
386 395Right-handed alpha
Helix 7
AA7
A
408 410Right-handed 310
Helix 8
AA8
A
411 421Right-handed alpha
Helix 9
AA9
A
427 444Right-handed alpha
Helix 10
AB1
B
150 154Right-handed 310
Helix 11
AB2
B
160 166Right-handed alpha
Helix 12
AB3
B
208 222Right-handed alpha
Helix 13
AB4
B
243 262Right-handed alpha
Helix 14
AB5
B
277 285Right-handed alpha
Helix 15
AB6
B
296 304Right-handed alpha
Helix 16
AB7
B
321 331Right-handed alpha
Helix 17
AB8
B
337 355Right-handed alpha
Helix 18
AB9
E
221 237Right-handed alpha
Helix 19
AC1
E
238 252Right-handed alpha
Helix 20
AC2
E
252 257Right-handed alpha
Helix 21
AC3
E
260 274Right-handed alpha
Helix 22
AC4
E
276 291Right-handed alpha
Helix 23
AC5
E
295 309Right-handed alpha
Helix 24
AC6
E
312 325Right-handed alpha
Helix 25
AC7
E
326 328Right-handed 310
Helix 26
AC8
E
331 336Right-handed alpha
Helix 27
AC9
E
340 353Right-handed alpha
Helix 28
AD1
E
392 409Right-handed alpha
Helix 29
AD2
E
424 462Right-handed alpha
Helix 30
AD3
E
467 472Right-handed alpha
Helix 31
AD4
E
475 489Right-handed alpha
Helix 32
AD5
E
497 521Right-handed alpha
Helix 33
AD6
E
521 534Right-handed alpha
Helix 34
AD7
E
548 555Right-handed alpha
Helix 35
AD8
E
568 587Right-handed alpha
Helix 36
AD9
E
597 600Right-handed 310
Helix 37
AE1
E
624 634Right-handed alpha
Helix 38
AE2
E
644 646Right-handed 310
Helix 39
AE3
E
679 684Right-handed alpha
Helix 40
AE4
E
688 691Right-handed 310
Helix 41
AE5
E
692 704Right-handed alpha
Helix 42
AE6
E
710 722Right-handed alpha
Helix 43
AE7
E
726 730Right-handed 310
Helix 44
AE8
E
734 738Right-handed 310
Helix 45
AE9
E
756 789Right-handed alpha
Helix 46
AF1
E
818 824Right-handed alpha
Helix 47
AF2
E
836 850Right-handed alpha
Helix 48
AF3
E
856 867Right-handed alpha
Helix 49
AF4
E
867 877Right-handed alpha
Helix 50
AF5
E
890 906Right-handed alpha
Helix 51
AF6
E
925 935Right-handed alpha
Helix 52
AF7
E
937 944Right-handed alpha
Helix 53
AF8
E
954 973Right-handed alpha
Helix 54
AF9
E
975 981Right-handed alpha
Helix 55
AG1
E
986 998Right-handed alpha
Helix 56
AG2
E
1002 1015Right-handed alpha
Helix 57
AG3
E
1025 1043Right-handed alpha
Helix 58
AG4
E
1044 1064Right-handed alpha
Helix 59
AG5
E
1111 1117Right-handed alpha
Helix 60
AG6
E
1118 1141Right-handed alpha
Helix 61
AG7
E
1156 1158Right-handed 310
Helix 62
AG8
E
1159 1175Right-handed alpha
Helix 63
AG9
E
1178 1190Right-handed alpha
Helix 64
AH1
E
1197 1209Right-handed alpha
Helix 65
AH2
E
1218 1225Right-handed 310
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There are 12 sheets in PDB entry 9BDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 287first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
260 265anti-parallel
Strand 4
A
318 323parallel
Strand 5
A
363 367parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 379first strand
Strand 2
A
382 383anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 197first strand
Strand 2
B
180 186anti-parallel
Strand 3
B
169 175anti-parallel
Strand 4
B
228 232parallel
Strand 5
B
273 276parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
411 415first strand
Strand 2
E
638 642anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
495 496first strand
Strand 2
E
616 623anti-parallel
Strand 3
E
606 613anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
588 590first strand
Strand 2
E
602 604anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
653 657first strand
Strand 2
E
660 662anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
794 795first strand
Strand 2
E
706 709anti-parallel
Strand 3
E
825 827anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
798 800first strand
Strand 2
E
806 808anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
831 832first strand
Strand 2
E
914 915anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
919 922first strand
Strand 2
E
1152 1155anti-parallel
Strand 3
E
1147 1149anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1069 1071first strand
Strand 2
E
1077 1079anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il