Analysis of interatomic Contacts of Structural Units in PDB entry:
9BDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9BDD entry

There are 6 chains in PDB entry 9BDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 146ASP 357
B
 LEU 151ASP 357
E
 GLN 218SER 1230
N
 A -24 C 4
R
 G 1 C 9
T
 G -12 T 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 9BDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 155Right-handed alpha
Helix 2
AA2
A
160 166Right-handed alpha
Helix 3
AA3
A
208 223Right-handed alpha
Helix 4
AA4
A
243 261Right-handed alpha
Helix 5
AA5
A
264 269Right-handed alpha
Helix 6
AA6
A
278 285Right-handed alpha
Helix 7
AA7
A
296 306Right-handed alpha
Helix 8
AA8
A
321 332Right-handed alpha
Helix 9
AA9
A
337 354Right-handed alpha
Helix 10
AB1
B
160 166Right-handed alpha
Helix 11
AB2
B
208 223Right-handed alpha
Helix 12
AB3
B
243 262Right-handed alpha
Helix 13
AB4
B
278 285Right-handed alpha
Helix 14
AB5
B
296 304Right-handed alpha
Helix 15
AB6
B
321 331Right-handed alpha
Helix 16
AB7
B
338 354Right-handed alpha
Helix 17
AB8
E
220 237Right-handed alpha
Helix 18
AB9
E
238 252Right-handed alpha
Helix 19
AC1
E
260 275Right-handed alpha
Helix 20
AC2
E
276 291Right-handed alpha
Helix 21
AC3
E
295 309Right-handed alpha
Helix 22
AC4
E
312 326Right-handed alpha
Helix 23
AC5
E
329 335Right-handed alpha
Helix 24
AC6
E
340 355Right-handed alpha
Helix 25
AC7
E
392 409Right-handed alpha
Helix 26
AC8
E
424 462Right-handed alpha
Helix 27
AC9
E
467 472Right-handed alpha
Helix 28
AD1
E
475 490Right-handed alpha
Helix 29
AD2
E
497 520Right-handed alpha
Helix 30
AD3
E
521 538Right-handed alpha
Helix 31
AD4
E
548 556Right-handed alpha
Helix 32
AD5
E
568 586Right-handed alpha
Helix 33
AD6
E
624 633Right-handed alpha
Helix 34
AD7
E
678 684Right-handed alpha
Helix 35
AD8
E
692 705Right-handed alpha
Helix 36
AD9
E
711 723Right-handed alpha
Helix 37
AE1
E
734 738Right-handed 310
Helix 38
AE2
E
747 750Right-handed 310
Helix 39
AE3
E
751 789Right-handed alpha
Helix 40
AE4
E
818 824Right-handed alpha
Helix 41
AE5
E
836 850Right-handed alpha
Helix 42
AE6
E
856 867Right-handed alpha
Helix 43
AE7
E
867 877Right-handed alpha
Helix 44
AE8
E
883 888Right-handed 310
Helix 45
AE9
E
890 906Right-handed alpha
Helix 46
AF1
E
925 936Right-handed alpha
Helix 47
AF2
E
937 944Right-handed alpha
Helix 48
AF3
E
954 970Right-handed alpha
Helix 49
AF4
E
975 982Right-handed alpha
Helix 50
AF5
E
986 997Right-handed alpha
Helix 51
AF6
E
1002 1017Right-handed alpha
Helix 52
AF7
E
1024 1044Right-handed alpha
Helix 53
AF8
E
1045 1065Right-handed alpha
Helix 54
AF9
E
1111 1141Right-handed alpha
Helix 55
AG1
E
1156 1158Right-handed 310
Helix 56
AG2
E
1159 1177Right-handed alpha
Helix 57
AG3
E
1178 1192Right-handed alpha
Helix 58
AG4
E
1197 1209Right-handed alpha
Helix 59
AG5
E
1221 1225Right-handed 310
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There are 12 sheets in PDB entry 9BDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 197first strand
Strand 2
A
180 186anti-parallel
Strand 3
A
169 175anti-parallel
Strand 4
A
228 233parallel
Strand 5
A
273 277parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
292 293anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 197first strand
Strand 2
B
180 186anti-parallel
Strand 3
B
169 175anti-parallel
Strand 4
B
228 233parallel
Strand 5
B
273 277parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 289first strand
Strand 2
B
292 293anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
412 415first strand
Strand 2
E
638 641anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
495 496first strand
Strand 2
E
616 623anti-parallel
Strand 3
E
606 613anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
588 590first strand
Strand 2
E
602 604anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
794 795first strand
Strand 2
E
706 709anti-parallel
Strand 3
E
825 827anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
798 800first strand
Strand 2
E
806 808anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
831 832first strand
Strand 2
E
914 915anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
919 922first strand
Strand 2
E
1152 1155anti-parallel
Strand 3
E
1147 1149anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1069 1071first strand
Strand 2
E
1077 1079anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il